Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48070 204 / 2e-63 RING/U-box superfamily protein (.1.2) AT5G62910 142 / 2e-39 RING/U-box superfamily protein (.1) AT1G74870 73 / 2e-14 RING/U-box superfamily protein (.1) AT2G28540 65 / 3e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT3G45630 62 / 4e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G60170 61 / 7e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069400 [exp] 487 / 7e-174 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2) Potri.016G084700 [exp] 64 / 9e-11 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G132300 [exp] 63 / 1e-10 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G026200 [exp] 59 / 4e-09 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042156 [exp] 250 / 1e-80 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 245 / 1e-78 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1) Lus10018126 [exp] 61 / 7e-10 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036140 [exp] 60 / 1e-09 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036138 [exp] 60 / 1e-09 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018125 [exp] 60 / 2e-09 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030454 [exp] 42 / 0.0006 AT3G03050 386 / 2e-126 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF14570 [poplar] [flax] zf-RING_4 RING/Ubox like zinc-binding domain
Representative CDS sequence Show only first row Show all	>Potri.012G074500.1 pacid=42783473 polypeptide=Potri.012G074500.1.p locus=Potri.012G074500 ID=Potri.012G074500.1.v4.1 annot-version=v4.1 ATGGTTTCCGATTCAATCAACGCTTCAATTCCTTCTGTCCCGAAAGATTTCGGCAAGAAGAAGAGGGCCAATAGGTCAGCCAAATTGAAACAGTGCAAGC TTGATGCTCGTCGCGAGCAATGGCTCTCTCAAGCTACTGTGAAGAATAGGGGATGCAAGGAGGAATTAATGGGCCCACGAGGGTCGCCACAACATATTCA TGAAGAGGGAAGGAAGAATCCGTTAGAAAATTTGCAGATGAGGCAGCAAGGAAGAGGAGTAGGGGAGGATGAGGATGAAAATGGGTCGATCCATCGTGAT TTTGATATGGATTCACCTTCAAATAGTCCTACTGGCAGCAGTGTCCTAGGTGGCAATGATTCAAGCACCAATTTTACTGCTTCCAGCAGTGGCAGCAGTA CTAGTGGAAGTAGCGGTGGTTGTTGCTCTGGTAGCATAACGGACGAGGATGACGAAGGGGATGATAGTTGCCTGGATGATTGGGAGGCTTTGGCGGATGC TTTAGCTGCCAATGACTATGATAATAAACAAGAAAACCATAATGATGATAACAATCCATGTTTGGAATTGCAGTCTTCACCGGAGCATGAACCTGTTGTT CAATTGGATTGTAATTCGTGCAACTTGGGTTCTAATCATGAGAATTTGACGCGGGAGAGAAGGATCCCATCAAGAGTGACTCCTGGGAATGGTCGGGCTT GGAGGCCGGATGATGCACTTCGTCCACAGAGTCTTCCTAATTTGTCCAAGCAGCGGAGCTTTCCGAATACTGATAGGCATTATGGACGGGGAATGCATGC ATGGGTTTGTGCTAGTGGTGTTAATGTGCCATCTGCATGTCCTATATGTACAGAAGATTTGGACTTCACAGATGCGAGTTTCCTGCCATGTTCATGTGGG TTTCAGGTCTGCCTTTTCTGCTACAACAAAATGCTTGAGCTGGATGGCCGCTGTCCGAACTGCAGGGAACTGTATAAGAATGATTCTGTGGAGGTGGAGG CCATTGTGCCCGGAAGTAATCTGACTTTAAGGTTGGATCGTTCTTGTAGCATGAGGTCATAG
AA sequence Show only first row Show all	>Potri.012G074500.1 pacid=42783473 polypeptide=Potri.012G074500.1.p locus=Potri.012G074500 ID=Potri.012G074500.1.v4.1 annot-version=v4.1 MVSDSINASIPSVPKDFGKKKRANRSAKLKQCKLDARREQWLSQATVKNRGCKEELMGPRGSPQHIHEEGRKNPLENLQMRQQGRGVGEDEDENGSIHRD FDMDSPSNSPTGSSVLGGNDSSTNFTASSSGSSTSGSSGGCCSGSITDEDDEGDDSCLDDWEALADALAANDYDNKQENHNDDNNPCLELQSSPEHEPVV QLDCNSCNLGSNHENLTRERRIPSRVTPGNGRAWRPDDALRPQSLPNLSKQRSFPNTDRHYGRGMHAWVCASGVNVPSACPICTEDLDFTDASFLPCSCG FQVCLFCYNKMLELDGRCPNCRELYKNDSVEVEAIVPGSNLTLRLDRSCSMRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	0	1
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.002G167400 [exp]	1.73	0.8854
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	2.00	0.8815
					Potri.001G371500 [exp]	4.58	0.8762
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	5.00	0.8642
AT3G12350			F-box family protein (.1.2)		Potri.002G117900 [exp]	5.29	0.8373
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	5.65	0.8339	CDC2.6
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	6.92	0.8637
AT1G32260			unknown protein		Potri.003G095600 [exp]	6.92	0.8703
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.001G399500 [exp]	8.83	0.8388
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	10.95	0.8392

Compare expression of checked genes

Potri.012G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.