Plant FIBer expression Database

EDS1.1 (Potri.012G074600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol EDS1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48080 156 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1)
AT3G48090 154 / 6e-42 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G074700
[exp]
328 / 6e-108 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1)
Potri.015G069600
[exp]
286 / 4e-92 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Potri.005G068700
[exp]
46 / 3e-05 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1)
Potri.001G290600
[exp]
44 / 0.0001 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042937
[exp]
244 / 1e-75 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10036644
[exp]
176 / 9e-52 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10036643
[exp]
49 / 4e-07 ND 44 / 8e-06
Lus10032169
[exp]
42 / 0.0006 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.012G074600.3 pacid=42783337 polypeptide=Potri.012G074600.3.p locus=Potri.012G074600 ID=Potri.012G074600.3.v4.1 annot-version=v4.1
ATGGGCACCCTTAAGATTGGAGAGGTCGTGGGGATCAACAAACAAGCTCACAAATCTCCAGAGAAACATTATCTCTCTAAAAAGATTAACGAATCATCGT
TTATTTTTAGCTTTCCTGGTTCTTGGACCTTCCAGCTATTCCCTTCCCTCAAATATACAGGTCTTGATGAAACTGCTACATGCGATGAAGCTTTTCTCAA
AAGATCCAAAGCAGAGGGGGCTATTGCCATCCTGGCAACAATTTGGTTCTTGGAACTGTACGTTCGACAAGGCTCTAAAGATACATCTCCTCTCTGTTTT
ACGTTTGGTTCTTCCCTTGCTGGCGATCGCACCATGAGCCATGCGCTTAGGCATATGACATTGTCCCTCCCTCGGATTTCACTCACTCCTCTCTCAGCTA
TTGAGCAACAGCTGCAGCAGGTTCTTGATTTTTTCAATCCAAAATCCAAATTTTACAAGCAAGAACATGCGGATCAAGTTCCAGGTTTCTTTGTTATTGT
GATGGAAAATGCATCGTCTGTTGCTAGGTATGCTGCCTGTAATACCATGGGGAGCCCAAACCTGCTTTTAGAGACTCTATCAAGCTTCATTAAATTAAGT
CCCTACACACCCTTAGGGACCTATGTCTTCTGTAATAGGAAACTTGTTGTCGAAAGTAATCCAGATGCCATTTTGCAAATACTGTTCAATTCTTCTCAGT
TAAGCACCGTAGAAGAAAAGGTGACAGTTGCCAGAGGAAGTCTAAGAGATCACTTGAACTACAAAAGCAAATTGTATCTAAGCGACAGGGCCAGACTCTG
TATTAGCGCCGCTAAAGAACTAGAGAAGCAGAAGCTGAGGAACCAGGCTGTAATCGACGAAAAGAAGAGAGATATTGAGGAAAAAATACAGAAGCTAGAA
GCGTACAAAAGCAACTGCGAACTTAGCAAAAGCTGCTATGATGAAGAAGAATTGTACTACAAATGTTTCCATCTACTTCTGTGGTTTAATAAACAAATTT
GCATGGCAGGTATGGGGAAAATAGAACTGTATTAG
AA sequence
>Potri.012G074600.3 pacid=42783337 polypeptide=Potri.012G074600.3.p locus=Potri.012G074600 ID=Potri.012G074600.3.v4.1 annot-version=v4.1
MGTLKIGEVVGINKQAHKSPEKHYLSKKINESSFIFSFPGSWTFQLFPSLKYTGLDETATCDEAFLKRSKAEGAIAILATIWFLELYVRQGSKDTSPLCF
TFGSSLAGDRTMSHALRHMTLSLPRISLTPLSAIEQQLQQVLDFFNPKSKFYKQEHADQVPGFFVIVMENASSVARYAACNTMGSPNLLLETLSSFIKLS
PYTPLGTYVFCNRKLVVESNPDAILQILFNSSQLSTVEEKVTVARGSLRDHLNYKSKLYLSDRARLCISAAKELEKQKLRNQAVIDEKKRDIEEKIQKLE
AYKSNCELSKSCYDEEELYYKCFHLLLWFNKQICMAGMGKIELY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G48080 alpha/beta-Hydrolases superfam... Potri.012G074600
[exp]
0 1 EDS1.1
AT3G61550 RING/U-box superfamily protein... Potri.014G091000
[exp]
3.31 0.8175
AT2G39840 TOPP4 type one serine/threonine prot... Potri.010G071850
[exp]
10.58 0.7956
AT1G54330 NAC ANAC020 NAC domain containing protein ... Potri.008G081500
[exp]
12.00 0.7776
AT5G41040 HXXXD-type acyl-transferase fa... Potri.015G100800
[exp]
13.85 0.7809
AT3G07720 Galactose oxidase/kelch repeat... Potri.014G168300
[exp]
16.61 0.7359
AT5G16200 50S ribosomal protein-related ... Potri.017G117866
[exp]
20.12 0.7083
AT5G20950 Glycosyl hydrolase family prot... Potri.019G037400
[exp]
22.71 0.7559
AT2G28930 APK1B protein kinase 1B (.1.2.3) Potri.009G031300
[exp]
28.89 0.7663 APK1.1
AT3G02600 ATLPP3, LPP3 lipid phosphate phosphatase 3 ... Potri.004G095400
[exp]
29.56 0.7231 LPP3.2
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.004G069300
[exp]
29.93 0.7436

Potri.012G074600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.