Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62020 2113 / 0 Coatomer, alpha subunit (.1) AT2G21390 2097 / 0 Coatomer, alpha subunit (.1) AT3G15980 255 / 1e-70 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 247 / 8e-68 structural molecules (.1.2.3.4.5) AT1G52360 247 / 9e-68 Coatomer, beta' subunit (.1.2) AT3G49660 120 / 1e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 112 / 1e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 105 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 102 / 7e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 102 / 1e-21 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069700 [exp] 2311 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.003G056300 [exp] 255 / 1e-70 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 253 / 1e-69 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 177 / 3e-48 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.005G148500 [exp] 120 / 2e-29 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 115 / 1e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 113 / 6e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 108 / 8e-24 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 107 / 2e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040752 [exp] 2128 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 2121 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 2102 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 1542 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 1422 / 0 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10035883 [exp] 1307 / 0 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1) Lus10037539 [exp] 580 / 0 AT1G62020 594 / 0.0 Coatomer, alpha subunit (.1) Lus10033092 [exp] 254 / 7e-70 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 174 / 3e-48 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 169 / 3e-46 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF04053 [poplar] [flax] Coatomer_WDAD Coatomer WD associated region CL0020 [poplar] [flax] TPR PF06957 [poplar] [flax] COPI_C Coatomer (COPI) alpha subunit C-terminus
Representative CDS sequence Show only first row Show all	>Potri.012G074800.2 pacid=42784314 polypeptide=Potri.012G074800.2.p locus=Potri.012G074800 ID=Potri.012G074800.2.v4.1 annot-version=v4.1 ATGTTGACCAAGTTTGAGACCAAGAGTAATAGAGTGAAGGGGCTGAGTTTCCACAGTAAGAGACCATGGATCCTTGCTAGTCTCCACAGTGGTGTGATCC AGCTATGGGACTATCGTATGGGCACTCTCATCGATCGCTTTGATGAGCATGATGGCCCTGTTCGTGGTGTTCATTTCCATAAATCTCAACCTCTTTTTGT CTCTGGAGGTGATGATTACAAGATTAAAGTCTGGAACTACAAATTGCATAGGTGTCTGTTTACACTTCTTGGACATCTTGATTACATTCGTACCGTGCAG TTTCATCATGAATACCCATGGATCGTGAGTGCCAGTGATGATCAGACCATCCGCATTTGGAACTGGCAGTCTCGTACTTGCATTTCTGTGTTGACAGGAC ACAATCATTATGTGATGTGTGCCTCATTCCACCCTAAAGAAGACCTTGTTGTTTCTGCATCTCTGGATCAGACTGTTCGTGTTTGGGATATTGGTGCTTT GAGAAAAAAGACGGTGTCCCCTGCTGATGACATCATGAGGCTTACACAGATGAACACTGATCTTTTTGGTGGTGTTGATGCTGTTGTTAAGTATGTTTTG GAGGGCCATGACAGAGGAGTCAACTGGGCTGCATTCCACCCAACACTACCTTTGATTGTCTCAGGAGCAGATGATCGCCAAGTAAAGTTGTGGCGCATGA ATGACACAAAGGCCTGGGAAGTGGACACGTTAAGAGGACACATGAACAATGTGTCATGTGTTATGTTCCATGCCAAGCAGGATATAATTGTATCAAATTC AGAGGATAAAAGCATTCGTGTCTGGGATGTAACTAAACGAACTGGTGTTCAAACTTTCCGTCGAGAACATGACCGATTCTGGATCCTTGCATCTCATCCT GAGATGAATCTTCTGGCTGCAGGTCATGACAGTGGCATGATTGTCTTTAAGTTAGAGAGAGAAAGGCCTGCTTTTGCTTTAAGTGGTGATTCTTTGTTCT ATACTAAAGATCGCTTTTTACGGTTTTTTGAGTTTTCAACTCAAAGAGATACACAAGTAATTCCCATCCGACGACCTGGCACCACAAGCCTGAATCAAAG TCCAAGAACTCTTTCGTACAGTCCTACAGAAAATGCTGTTCTTATCTGCTCGGATGTGGATGGAGGATCTTATGAGTTATATGTCATTCCTAAAGACAGC ATTGCTAGGGGTGATGCTGTGCCAGAGGCAAAGAGAGGTGCTGGTGGATCTGCTGTCTTTGTGGCTCGGAATAGGTTTGCTGTGCTTGATAAGAGCAGCA ATCAAGTCCTAGTTAAGAACCTCAAGAATGAAGTTGTCAAAAAGAGTGGTCTTCCTATCAGTTGTGATGCTATATTCTATGCTGGGACAGGTAACTTGCT TTGCAGGGCAGAGGATAGGGTGGTCATATTTGATCTCCAGCAGAGGCTTGTTCTCGGGGAGTTGCAGACACCTTTTGTCAAGTATGTTGTTTGGTCCAAT GACATGGAAAGTGTTGCCTTGCTAAGCAAACATGCCATCATCATTGCTAGCAAGAAGCTTGTCCACCAATGCACCCTCCATGAAACAATCCGTGTAAAGA GTGGAGCTTGGGATGATAATGGTGTTTTCATTTACACAACTTTAAATCATATCAAATACTGCCTGCCTAATGGAGATAGTGGTATAATTAGAACCCTTGA TGTCCCAATATATATCACTAAGATTTCTGGAAATACTATCTTTTGCTTAGATCGGGATGGGAAGAATAAGCCTATTGTTATTGATGCTACAGAATACATC TTTAAACTGTCTCTGCTGAAGAAGAGATATGATCATGTTATGAGCATGATAAGGAACTCACAGCTTTGTGGTCAGGCAATGATTGCTTATTTGCAACAGA AGGGGTTCCCAGAAGTCGCTCTGCATTTTGTGAAAGATGAGAGAACTAGGTTTAATTTGGCTTTAGAGAGTGGAAATATTCAGATTGCTGTGGCTTCAGC AAAGGAAATTGATGAGAAAGACCACTGGTATAGGTTGGGGGTTGAAGCTCTTCGCCAAGGGAATGCAGGTATAGTTGAATATGCCTACCAGAGGACAAAA AATTTTGAGAGGTTATCTTTCCTTTATCTCATAACTGGTAATTTAGAAAAGCTGTCCAAGATGCTTAGAATTGCTGAAGTTAAGAATGATGTCATGGGTC AGTTTCACAATGCCTTGTACCTGGGTGATGTCAGAGAACGTGTTAAGATCTTGGAGAATGCTGGCCATCTGCCACTTGCTTATGCCGCAGCTAAGGTCCA TGGGCTGGAGGATGTTGTGGAACGTCTAGCAGCTGAGTTGGGAGATGATATTCCATCTTTTCCCAAGGGTAAAGAACCATCCCTTCTGATGCCCCCAGCC CCTATTATGTGTGGTGGTGATTGGCCTCTTCTGAGAGTCATGAAAGGTATATTTGAAGGTGGGCTGGATAATATGGTCAGAGGTGGTGCTGATGAGGATG AAGAAGAAGCTGCTGATGGTGATTGGGGCGAGGAACTGGACATGGTCGACGCGGTTGGTTTACAAAATGGGGATGTCACCGCAATTTTGGAGGATGGGGA AGCAGCTGAAGAAAATGAAGAGGAGGAGGGAGGATGGGACCTTGAAGATCTGGAGCTACCTCCCGAGGCAGACACGCCAAGGGCTTCTGTGAGTGCCCGC TCATCAGTTTTTGTTGCTCCAACTCCTGGTATGCCTGTAAGCCAGATTTGGATTCAGAGATCTTCACTTGCTGCTGAACACGCCGCGGCTGGCAATTTCG ACACTGCCATGCGACTACTCAACAGGCAACTTGGAATTAAAAACTTTGTGCCTTTAAAACCCATGTTTCTTGATCTTCACTCAGGCAGCCATACCTATTT ACGTGCATTTTCATCTACCCCAGTGATTTCACTGGCTGTTGAACGGGGATGGAACAAGTCTGCTAGCCCCAATGTTAGGGCCCCTCCAGCTCTGGTTTTC GACTTCTCTCAATTGGAAGAGAAGCTTAAGGCTGGTTACAAAGCCACGACAGCTGGGAAATTTACCGAGGCACTTAAACTCTTTCTTAGCATTCTTCACA CAATTCCTCTGATAGTTGTTGACTCGAGGAGGGAAGTTGATGAAGTCAAGGAATTGATTATTATAGTCAAAGAGTATGTTTTGGGTCTGCAAATGGAGCT CAAGAGGAGGGAGATGAAAGACAATCCAGTACGCCAACAAGAGCTTGCTGCCTACTTCACACACTGCAACCTGCAAGCTCCTCACTTGAGGCTTGCGCTT CAAAATGCAATGACTGTCTGCTTCAAGAATAAGAACCTTGCTACGGCAGCTAACTTTGCCAGACGGCTATTGGAGACAAACCCCCCGAATGAGAACCAGG CAAGGTCTGCCAGGCAAGTATTGGCAGCTTCAGAGAGGAATATGACAGATGCTGCTCAGCTGAACTATGATTTTAGAAATCCTTTTGTGGTATGTGGTGC AACATATGTTCCAATTTATCGAGGACAAAAGGATGTCTCTTGCCCGTATTGTGGTTCCCGATTTGTACCAAGCCATGAAGGGCAGCTGTGTACTGTTTGT GATCTTGCAGTAGTTGGGGCAGATGCTTCAGGGTTGCTCTGTTCTCCTTCCCAGATACGATGA
AA sequence Show only first row Show all	>Potri.012G074800.2 pacid=42784314 polypeptide=Potri.012G074800.2.p locus=Potri.012G074800 ID=Potri.012G074800.2.v4.1 annot-version=v4.1 MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQ FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNTDLFGGVDAVVKYVL EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP EMNLLAAGHDSGMIVFKLERERPAFALSGDSLFYTKDRFLRFFEFSTQRDTQVIPIRRPGTTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDS IARGDAVPEAKRGAGGSAVFVARNRFAVLDKSSNQVLVKNLKNEVVKKSGLPISCDAIFYAGTGNLLCRAEDRVVIFDLQQRLVLGELQTPFVKYVVWSN DMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKISGNTIFCLDRDGKNKPIVIDATEYI FKLSLLKKRYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTK NFERLSFLYLITGNLEKLSKMLRIAEVKNDVMGQFHNALYLGDVRERVKILENAGHLPLAYAAAKVHGLEDVVERLAAELGDDIPSFPKGKEPSLLMPPA PIMCGGDWPLLRVMKGIFEGGLDNMVRGGADEDEEEAADGDWGEELDMVDAVGLQNGDVTAILEDGEAAEENEEEEGGWDLEDLELPPEADTPRASVSAR SSVFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFVPLKPMFLDLHSGSHTYLRAFSSTPVISLAVERGWNKSASPNVRAPPALVF DFSQLEEKLKAGYKATTAGKFTEALKLFLSILHTIPLIVVDSRREVDEVKELIIIVKEYVLGLQMELKRREMKDNPVRQQELAAYFTHCNLQAPHLRLAL QNAMTVCFKNKNLATAANFARRLLETNPPNENQARSARQVLAASERNMTDAAQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSHEGQLCTVC DLAVVGADASGLLCSPSQIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62020			Coatomer, alpha subunit (.1)		Potri.012G074800 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Potri.001G260900 [exp]	11.22	0.8509
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	13.41	0.8320
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.004G153500 [exp]	14.03	0.8668
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	14.14	0.8251
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	15.09	0.8650
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	16.61	0.8511
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	16.91	0.8387
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	17.32	0.8536
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	18.81	0.8017	CEF.2
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	24.73	0.8281	CESA3.1

Compare expression of checked genes

Potri.012G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.