Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APC8.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48150 957 / 0 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT2G20000 121 / 9e-29 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 114 / 2e-26 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G06210 58 / 2e-08 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1) AT3G04240 58 / 2e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56290 56 / 7e-08 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248550 [exp] 111 / 1e-29 AT3G48150 97 / 2e-25 anaphase-promoting complex subunit 8 (.1) Potri.018G086300 [exp] 121 / 8e-29 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 121 / 9e-29 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.008G215100 [exp] 69 / 3e-12 AT2G39090 752 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.010G022100 [exp] 69 / 3e-12 AT2G39090 747 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.011G170000 [exp] 61 / 2e-09 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G473100 [exp] 60 / 4e-09 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.019G025600 [exp] 59 / 6e-09 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 55 / 1e-07 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042152 [exp] 965 / 0 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 939 / 0 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10012968 [exp] 119 / 4e-28 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034164 [exp] 74 / 1e-13 AT2G39090 801 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10004779 [exp] 62 / 7e-10 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 59 / 9e-09 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 56 / 7e-08 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032883 [exp] 54 / 3e-07 AT5G56290 758 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10027124 [exp] 54 / 3e-07 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Lus10043419 [exp] 54 / 4e-07 AT2G39090 756 / 0.0 anaphase-promoting complex 7, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04049 [poplar] [flax] ANAPC8 Anaphase promoting complex subunit 8 / Cdc23 CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.012G075000.1 pacid=42783946 polypeptide=Potri.012G075000.1.p locus=Potri.012G075000 ID=Potri.012G075000.1.v4.1 annot-version=v4.1 ATGAACTCGAAAGAGACTTGCCGGAGCGAGCTTCGCATTGCCCTTCGCCAACTAAGCGATCGCTGCCTTTACTCTGCTTCCAAATGGGCAGGGGAGCAGC TGGTAGGAATCGAGCAAGACCCTGCAAAGTTCACTCCTACAAACACCAGATTCCAGCGTGGAAGTTCTAGCATTCGTCGAAGATTCCGAACCAATGACAT TACCTCAACGCCTGTTACTGGCATGTCTTATGTGTCCACTCCTGTATTGGAGGAAGATGAGGTCATAGATGGTGACTTCTACCTTCTGGCTAAGTCCTAC TTTGACTGTCGAGAGTATAAAAGGGCTGCTCATGTGCTTCGCGATCAAAATGCAAAGAAATCAGTTTTCTTGCGCTGTTATGCTCTTTATCTGGCTGGAG AAAAGAGGAAAGAAGAAGAGATGATAGAACTTGAGGGGCCCCTTGGTAAGAGTGATGCTGTTAACCGTGAGCTGGTTTCTCTGGAGAGGGAGTTGTCAAC TCTTCGCAAGAATGGCACAATTGATCCCTTTGGGTTATACTTATATGGTCTTGTGCTTAAAAACAGAGGCAATCAAAATCTTGCTCGGACAGTCATTGTG GAGTCTGTGAATAGCTACCCTTGGAACTGGAATGCCTGGACAGAGCTGCAGTCTTTATGTACCACAATTGAGATGCTGAACAGCCTTAACCTAAGCAACC ACTGGATGAAGGACTTCTTTCTTGCCAGTGCTTACCAAGAGCTCCGGATGCACAATGAATCCCTTGCCAAATATGAATATCTTCAAGGTACATTCAGTTT TAGTAATTACATACAGGCTCAGATTGCCAAAGCTCAATATTGTTTGAGAGAATTTGATCAAGTCGAGGTAATATTTGAAGAACTTTTGAGAAATGACCCC TATCGAGTGGAAGACATGGATATGTATTCCAATGTCCTCTATGCAAAGGAGTGTTTCTCTGCTCTTAGTTACCTTGCCCACAGGGTATTTATGACTGATA AATACAGGCCTGAATCTTGCTGCATCATTGGAAATTATTACAGTTTAAAGGGCCAGCATGAGAAGTCTGTTATGTATTTTAGGAGGGCACTCAAGCTGGA CAAAAAATATTTGTCTGCTTGGACACTTATGGGTCATGAGTATGTTGAAATGAAAAACACTCCTGCTGCTGTTGATGCTTATCGACGGGCTGTGGATATC AATCCTTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCTTATGAGATGATGGGGATGCCCTTCTATGCACTACACTATTTTAAGAAGTCGGTGTTCT TGCAGCCAAGTGATTCTCGATTGTGGATTGCCATGGCCCAGTGCTATGAAACTGATCAGCTTCATTTGCTTGAGGATGCAATCAAGTGTTACAGAAGGGC TGCAAATTGTAATGACAAGGAAGCGATAGCCCTGCATCAGTTAGCAAAACTGCACTTTGAGCTTGGGCGTCCAGAAGAGGCAGCATTTTACTACAAAAAG GACTTGGATAGGATGGAAGATGAAGAGAGGGAAGGACCAAACATGGTTGAAGCCTTGCTCTTTCTTGCCCAACACTGCAGAACTCATAAGAGATTAGAAG AAGCAGAGGTGTATTGCACCCGTCTTCTGGATTACACTGGCCCAGAGAAGGAAATGGCAAAGAATATGCTTCGTGGAATGAGATCAGAATCTAGTTTTCC TTCAATGGATGTTGAGCATTTTCCTCCCTGA
AA sequence Show only first row Show all	>Potri.012G075000.1 pacid=42783946 polypeptide=Potri.012G075000.1.p locus=Potri.012G075000 ID=Potri.012G075000.1.v4.1 annot-version=v4.1 MNSKETCRSELRIALRQLSDRCLYSASKWAGEQLVGIEQDPAKFTPTNTRFQRGSSSIRRRFRTNDITSTPVTGMSYVSTPVLEEDEVIDGDFYLLAKSY FDCREYKRAAHVLRDQNAKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELVSLERELSTLRKNGTIDPFGLYLYGLVLKNRGNQNLARTVIV ESVNSYPWNWNAWTELQSLCTTIEMLNSLNLSNHWMKDFFLASAYQELRMHNESLAKYEYLQGTFSFSNYIQAQIAKAQYCLREFDQVEVIFEELLRNDP YRVEDMDMYSNVLYAKECFSALSYLAHRVFMTDKYRPESCCIIGNYYSLKGQHEKSVMYFRRALKLDKKYLSAWTLMGHEYVEMKNTPAAVDAYRRAVDI NPCDYRAWYGLGQAYEMMGMPFYALHYFKKSVFLQPSDSRLWIAMAQCYETDQLHLLEDAIKCYRRAANCNDKEAIALHQLAKLHFELGRPEEAAFYYKK DLDRMEDEEREGPNMVEALLFLAQHCRTHKRLEEAEVYCTRLLDYTGPEKEMAKNMLRGMRSESSFPSMDVEHFPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Potri.012G075000 [exp]	0	1	APC8.2
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.007G048700 [exp]	10.48	0.8606
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	19.13	0.8557
AT4G24265			unknown protein		Potri.003G001200 [exp]	25.92	0.8155
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.017G081000 [exp]	27.22	0.8541
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	29.52	0.8397
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	31.68	0.8474
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	31.74	0.8377
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	36.74	0.8376
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G246900 [exp]	38.96	0.7926	Pt-TUB2.1
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.013G028800 [exp]	39.24	0.8202

Compare expression of checked genes

Potri.012G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.