Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PI3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60490 1388 / 0 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT1G49340 155 / 2e-38 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT5G64070 123 / 2e-28 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 121 / 6e-28 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G51040 100 / 1e-21 Protein kinase superfamily protein (.1) AT1G50030 82 / 2e-15 TOR target of rapamycin (.1.2) AT3G48190 54 / 7e-07 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G113700 [exp] 150 / 5e-37 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 148 / 4e-36 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.007G109000 [exp] 125 / 4e-29 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.005G059000 [exp] 122 / 2e-28 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.009G084500 [exp] 86 / 1e-16 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.001G289200 [exp] 81 / 4e-15 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.004G179000 [exp] 59 / 2e-08 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Potri.004G147800 [exp] 56 / 2e-07 AT1G50030 252 / 2e-66 target of rapamycin (.1.2) Potri.015G076650 [exp] 51 / 4e-06 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030885 [exp] 1420 / 0 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030605 [exp] 1340 / 0 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10040481 [exp] 148 / 4e-36 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011285 [exp] 140 / 1e-33 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10000833 [exp] 116 / 3e-26 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10037246 [exp] 83 / 8e-16 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 82 / 2e-15 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10002098 [exp] 69 / 1e-11 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10025091 [exp] 64 / 7e-10 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10023991 [exp] 61 / 4e-09 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [poplar] [flax] TPR PF00613 [poplar] [flax] PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain) CL0154 [poplar] [flax] C2 PF00792 [poplar] [flax] PI3K_C2 Phosphoinositide 3-kinase C2
Representative CDS sequence Show only first row Show all	>Potri.012G075100.1 pacid=42783067 polypeptide=Potri.012G075100.1.p locus=Potri.012G075100 ID=Potri.012G075100.1.v4.1 annot-version=v4.1 ATGAGTGGAAAGGAATTTCGATTCTTCTTGTCCTGCGACATCAATCTCCCCGTCACTTTTCGTGTCGAGAGACTCCTCGGACCTTTGCCTTCTTCTCCTA CGAAGTCACCCAATTCAGAAGAGATAAATGCAGAGCTGTACGTTGAGTGTGCCTTGTACATTGATGGCGCTCCATTCGGCCTTCCCATCAGAACTAGATT GGAATCTGGTGGAGCATCATATTGCTGGAATGAGCTGATCACCATGAGCACTAAATATCGCGACTTAACTGCCCACTCACAGCTCGCTTTCACGGTTTGG GATGTTTCGTGTGGGAAAGATGAGGGATTGATTGGAGGAGCAACCATTCTTCTTTTTAACAACAAGATGCAACTCAAAACAGGGAAGCAAAAGCTTAGGC TTTGGCCAGGGAAGGAAGCTGATGGATCATTTCCGACAACTACTCCTGGAAAGGTCCCCAAGCATGAGCGTGGGGAGGTGGAGCGTTTAGAGAAGCTTGT TAATAAATATGAGAGAGGACAAATTCAATGTGTTGATTGGCTCGACCGTCTCACTTTCAAAGCTATGGAGAAAATCAAGGAACTTGAAAACTGTAAAAAT GGAAATTCTTCCTTATACTTGGTTGTTGATTTTTGCAGTCTTGAACATCGAGTTGTTTTTCAGGAGTCAGGAGCAAATTTCTTATTACCATCTCCTATAG CGTCAACGAATGAGCTTGTTACTGTGTGGGATCCAGAAATTGGAAAGATAAATCCCTCTGAGCACAAGCAACTAAAGCTGGCAAGAAGTCTGACACGAGG TATAATTGACAGGGATCTGAAGCCAAGCTCTAATGAACGGAAGTCAATTCAAAGGATTCTGAAGTACCCGCCAACAAGGATTTTGAATGGAGATGAAAGA CAGCTTCTGTGGAAATTCCGTTTCTCATTGATGTCAGAGAAGAGGGCTCTTACAAAGTTCCTACGATGTGTTGAATGGAGTGATGTTCAGGAAGCAAAGC AGGCATTAGAATTGATGAATAGGTGGGAAATGATTGATGTATGTGATGCATTGGAGCTTCTATCTCCTGTATTTGAGAGGGAAGAGGTTCGTGCATATGC TGTCAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTACTTACTTCAACTGGTTCAGGCTCTTAGATTTGAGCGCTCTGATAAATCTCGCCTT TCTCAATTCCTCGTAAAACGCTCATTAAACAACATCGAGTTGGGTAGCTTTCTTCGTTGGTATGTTGCTGTGGAACTTTATGATCCTGCATATGCAAAAC GGTTTTATTCTACGTATGAGATACTGGAGGAGAATATGGTGAAGTTGGCAGCTGGTCCAAGTGGAGAAGAAGATGGATTTAAGTTGTGGCAGAGTTTGGT GCGCCAGACAGAATTGACAGCCCAGTTATGTTCTATAACAAAAGATTTAAGAAATGTGAGGGGCAATACTCAGAAGAAAACTGAAAAGCTTAGACAACTT CTCTCAGGTCTTCTTAGTGAACTTACCTATTTTGAAGAGCCAATAAGATCACCGCTTGCTCCAGGTGTCCTTATCACTGGGATAGTGCCATCAGAGTCTA CGATATTCAAAAGTGCACTGCATCCTTTGCGCCTGACTTTTCGAACACACAATGGTGGAACTTGCAAGGTCATATTTAAGAAGGGGGATGATCTTCGGCA AGACCAATTGGTTGTCCAAATGGTATCTCTAATGGACCGATTGCTTAAGTTGGAAAATCTTGATCTGCACTTAACTCCATATAAGGTGCTTGCTACTGGA CAGGATGAAGGCATGCTAGAATTCATACCATCACGTTCATTGGCTCAGATTCTCCAAGAGCATCGTAGCATTATCAACTATTTGCAGAAGTTTCATCCTG ATGAACATGGACCATTTGGGATCACAGCCTCCTGTCTTGAGACATTCATTAAAAGTTGTGCTGGCTACTCTGTAATCACATATATATTGGGTGTTGGAGA CAGGCACCTAGACAACCTTCTCCTCACGGAAGATGGGCGTCTTTTCCATGTTGATTTTGGTTTTATTCTTGGCCGAGATCCAAAGCATTTTCCACCACCA ATGAAACTCTGCAAAGAAATGGTTGAGGCCATGGGGGGTGCAGAAAGCCCATACTATACCAGGTTTAAATCCTACTGCTGTGAAGCATACAACATCATTA GGAAGTCCAGTAACCTAATTTTGAATCTTTTCCATCTGATGGCGGGTTCCAACATTCCTGACATAGCTTCTGATCCTGAAAAAGGCATTCTCAAGCTTCA GGAGAAGTTTCGGTTGGACATGGATGATGAGGCCTGCATACACTTTTTCCAGGATCTTATAAATGAGAGTGTTAGTGCATTGTTCCCTCAAATGGTTGAG ACCATTCATCGGTGGGCTCAGTACTGGCGTTAA
AA sequence Show only first row Show all	>Potri.012G075100.1 pacid=42783067 polypeptide=Potri.012G075100.1.p locus=Potri.012G075100 ID=Potri.012G075100.1.v4.1 annot-version=v4.1 MSGKEFRFFLSCDINLPVTFRVERLLGPLPSSPTKSPNSEEINAELYVECALYIDGAPFGLPIRTRLESGGASYCWNELITMSTKYRDLTAHSQLAFTVW DVSCGKDEGLIGGATILLFNNKMQLKTGKQKLRLWPGKEADGSFPTTTPGKVPKHERGEVERLEKLVNKYERGQIQCVDWLDRLTFKAMEKIKELENCKN GNSSLYLVVDFCSLEHRVVFQESGANFLLPSPIASTNELVTVWDPEIGKINPSEHKQLKLARSLTRGIIDRDLKPSSNERKSIQRILKYPPTRILNGDER QLLWKFRFSLMSEKRALTKFLRCVEWSDVQEAKQALELMNRWEMIDVCDALELLSPVFEREEVRAYAVSVLERADDEELQCYLLQLVQALRFERSDKSRL SQFLVKRSLNNIELGSFLRWYVAVELYDPAYAKRFYSTYEILEENMVKLAAGPSGEEDGFKLWQSLVRQTELTAQLCSITKDLRNVRGNTQKKTEKLRQL LSGLLSELTYFEEPIRSPLAPGVLITGIVPSESTIFKSALHPLRLTFRTHNGGTCKVIFKKGDDLRQDQLVVQMVSLMDRLLKLENLDLHLTPYKVLATG QDEGMLEFIPSRSLAQILQEHRSIINYLQKFHPDEHGPFGITASCLETFIKSCAGYSVITYILGVGDRHLDNLLLTEDGRLFHVDFGFILGRDPKHFPPP MKLCKEMVEAMGGAESPYYTRFKSYCCEAYNIIRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDMDDEACIHFFQDLINESVSALFPQMVE TIHRWAQYWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	0	1	Pt-PI3.1
AT1G21610			wound-responsive family protei...		Potri.007G101201 [exp]	18.08	0.6602
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	18.33	0.6618
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	19.49	0.6476
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.012G079600 [exp]	24.49	0.6472
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	27.38	0.6123
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	30.00	0.6515
AT4G38350			Patched family protein (.1.2)		Potri.009G167000 [exp]	42.53	0.6376
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	47.74	0.6134
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	49.14	0.5532
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020600 [exp]	51.38	0.5476

Compare expression of checked genes

Potri.012G075100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.