Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74910 717 / 0 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G04650 637 / 0 ADP-glucose pyrophosphorylase family protein (.1) AT2G39770 181 / 3e-53 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 181 / 3e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 176 / 2e-51 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G34970 50 / 3e-06 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070500 [exp] 782 / 0 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.008G060100 [exp] 192 / 2e-57 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 190 / 1e-56 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 189 / 2e-56 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G006700 [exp] 174 / 1e-50 AT2G39770 619 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032440 [exp] 751 / 0 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10042942 [exp] 742 / 0 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10024356 [exp] 198 / 1e-59 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10004699 [exp] 194 / 4e-58 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 194 / 4e-58 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 123 / 1e-31 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 123 / 1e-31 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10015338 [exp] 92 / 2e-22 AT1G74910 95 / 5e-24 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10010879 [exp] 91 / 1e-21 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10018991 [exp] 51 / 2e-06 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.012G075500.2 pacid=42783544 polypeptide=Potri.012G075500.2.p locus=Potri.012G075500 ID=Potri.012G075500.2.v4.1 annot-version=v4.1 ATGGGAAGCTCTGAGGAGAGGGTTGTTGCTGTCATCATGGTCGGTGGACCTACTAAAGGCACTAGATTCAGGCCATTGTCATTGGATATTCCAAAGCCTC TTTTTCCTCTAGCAGGACAACCAATGGTTCACCATCCAATCTCTGCTTGTAAAAAGATTCCAAACTTGACGCAGATCTATCTTGTTGGTTTCTACGAGGA AAGAGAGTTTGCTTTGTATGTTTCCTCAATCTCGAATGAGCTGAAAGTGTCTGTTAGATATTTGCGGGAAGATAAGCCACATGGTTCTGCTGGCGGGCTT TTTAACTTCAGAGATCTAATCATGGAAGACAACCCGTCCCATATCTTTCTGCTGAATTGTGATGTTTGCTGCAGTTTTCCACTCCCAGAAATGCTTGAGG CCCACAGAGCATATGGTGGGATGGGAACTATCCTAGTAATCAAGGTCTCAGCTGAGTCAGCCAGCCAGTTTGGGGAATTGGTAGCTGATCCTGACACCAA TGAGTTGTTGCATTACACAGAGAAGCCTGAAACTTTTGTAAGTGACCGGATAAATTGTGGTGTTTATGTTTTTACACCAGAAATATTCACAGCCATCCAG GGTGTTTCTTCTCAACGGAAAGACAGAGCTAATCTGAGACGTGTTTCTAGCTTCGAAGCCCTCCAATTTTCTACAAGGAGTCTTCCGACAGATTATGTAA GATTGGATCAGGATATCCTGTCACCCCTTGCTGGAAAAAAGCAGCTATATACGTATGAAACCATGGACTTCTGGGAACAAATTAAAACACCTGGAATGTC TCTAAAGTGTTCTGGTTTATATCTTGCCCAATTCCAATTCACCTCACCCCATCTTTTGGCTGGTGGTGATGGCTCAAAGAGTGCTACTATTGAAGGTGAT GTTTATATACATCCATCAGCAAAAGTACATCCAACTGCTAAGATTGGTCCCAATGTCTCTATATCTGCCAATGCTCGCATAGGACCAGGTGCAAGACTCA TAAGGTGTATCATCCTAGATAATGTTGAAGTCATGGAAAATGCAGTCGTCATTTATTCAATTGTTGGGTGGAACTCTTCCATTGGGAGATGGTCCCGTGT CCAGGCTGAAGGTGATTACAATGCCAAGCTTGGGGTTACAATCCTTGGCGAAGGTGTTACTGTTGAGGATGAAGTAGTGGTGATTAACAGCATTGTCCTC CCATACAAGACACTCGATGTTAGTGTTCAGGACGAAATTATTTTATAG
AA sequence Show only first row Show all	>Potri.012G075500.2 pacid=42783544 polypeptide=Potri.012G075500.2.p locus=Potri.012G075500 ID=Potri.012G075500.2.v4.1 annot-version=v4.1 MGSSEERVVAVIMVGGPTKGTRFRPLSLDIPKPLFPLAGQPMVHHPISACKKIPNLTQIYLVGFYEEREFALYVSSISNELKVSVRYLREDKPHGSAGGL FNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLEAHRAYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDRINCGVYVFTPEIFTAIQ GVSSQRKDRANLRRVSSFEALQFSTRSLPTDYVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFQFTSPHLLAGGDGSKSATIEGD VYIHPSAKVHPTAKIGPNVSISANARIGPGARLIRCIILDNVEVMENAVVIYSIVGWNSSIGRWSRVQAEGDYNAKLGVTILGEGVTVEDEVVVINSIVL PYKTLDVSVQDEIIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.012G075500 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	5.29	0.8067
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	6.00	0.7762
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	6.48	0.7719
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	11.35	0.8354	Pt-TTN1.1
AT3G52990			Pyruvate kinase family protein...		Potri.010G233200 [exp]	13.41	0.7366
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	15.87	0.7389
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	17.14	0.7344
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	17.49	0.7851	APGM.2
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.011G052800 [exp]	19.05	0.8157	Pt-NSF.2
AT2G26260		AT3BETAHSD/D2	3beta-hydroxysteroid-dehydroge...		Potri.006G218400 [exp]	19.59	0.8295

Compare expression of checked genes

Potri.012G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.