Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALDH10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74920 861 / 0 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 846 / 0 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 392 / 6e-132 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 368 / 3e-122 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 354 / 7e-117 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G79440 327 / 2e-106 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 210 / 2e-61 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 198 / 2e-57 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 195 / 5e-56 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G14170 184 / 5e-52 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070600 [exp] 939 / 0 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.018G075000 [exp] 359 / 3e-119 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G074100 [exp] 350 / 4e-115 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 346 / 1e-113 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 340 / 4e-111 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.010G174000 [exp] 327 / 2e-106 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 216 / 4e-63 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.006G186800 [exp] 203 / 3e-59 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G020600 [exp] 200 / 5e-58 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034115 [exp] 838 / 0 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10043470 [exp] 823 / 0 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042149 [exp] 819 / 0 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 758 / 0 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 643 / 0 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004238 [exp] 551 / 0 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 354 / 4e-117 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 353 / 2e-116 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 350 / 1e-115 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10012999 [exp] 346 / 1e-113 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.012G075600.1 pacid=42783624 polypeptide=Potri.012G075600.1.p locus=Potri.012G075600 ID=Potri.012G075600.1.v4.1 annot-version=v4.1 ATGGCGATCCATCTACCTAATCGACAGCTATTCATCGACGGAGAATGGAGAGAAACCGTTCTCAAAAAACGCATCCCCGTTATCAACCCTGCCACTGAAC AGATCATCGGTGATATACCAGCAGCCACTGCAGAAGATGTGGAGATTGCAGTTGAAGCAGCTAAGAAAGCATTTTCTAGGAACAAAGGCAAAGATTGGTC CTCCGCGTCAGGTGCTTATCGTGCCAGGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCAGAACTAGGAAAACTTGAAGCAATTGATAGT GGAAAACCTCTAGATGAAGCACTGTGGGACATGGATGATGTTGCAGGATGTTTTGAGTACTATGCGGACCTTGCTGAAGGCTTAGATACAAAGCAGAAAG CTCCTGTTTCTCTTCCTATGGAAACATTTAAGAGCTTTGTTCTTAAAGAACCACTTGGGGTTGTTGCTCTGATCACTCCATGGAATTACCCACTATTGTT GGCTACATGGAAAGTGGCTCCAGCCCTGGCCGCAGGTTGCACTGCAATACTGAAGCCTTCTGAACTGGCATCTGTGACTTGTTTGGAGCTGGGTGAAGTG TGTAGGGAGGTTGGTCTTCCCCCTGGTGTCCTCAATATTTTAACTGGGTTGGGCACTGAAGCAGGTGCTCCTTTGGCATCTCATCCCCATGTTGACAAGG TTGCATTTACTGGGAGCACTGCTACAGGGAGCAGGATAATGGCATCTGCAGCTCAAATGGTCAAGCCTGTTTCAATGGAGCTAGGTGGGAAAAGCCCAAT CATTGTTTTTGAGGATGTTGATCTTGATAAGGCGGCTGAGTGGACCCTCTTTGGTTGCTTTTGGACAAATGGCCAGATATGCAGTGCAACATCCCGTCTT TTAGTGCATGAAAGCATTGCATCAGAATTTTTGGACAAGCTTGTCAAATGGACCAAAAAAATTAAAATTTCTGATCCTTTCGAAGAGGGTTGCAGGCTTG GCCCACTTGTCAGTGGAGAGCAGTATGATAAAATATTAAAATTCATTGCAACCGCCAAGAGTGAAGGTGCAACCATTTTGAGTGGTGGGGATCGTCCCAA GCATTTAAACAAGGGATTCTTTGTTGAACCAACCATCATCATTGATGTAACAACCTCCATGCAAATCTGGAGAGAAGAAGTTTTCGGGCCTGTTCTATGT GTTAAAACATTTAGTACTGAAGATGAAGCCATCGATTTGGCAAATGACACCCATTATGGCTTAGGAGCTGCTGTTATATCAAATGATCCAGAGAGGTGTG ATCGTGTAGCCAAGGCTTTCCGGGCAGGTATTGTCTGGATCAATTGCTCACAGCCATGCTTCTGTCAAGCTCCATGGGGAGGCATTAAGCGCAGTGGTTT TGGGCGTGAATTAGGAGAATGGGGACTTGAAAACTACTTAAGTGTGAAGCAGGTAACTCGATATATCTCTGAAGAACCATGGGGTTGGTACCAGGCTCCC TCAAAGCTATAA
AA sequence Show only first row Show all	>Potri.012G075600.1 pacid=42783624 polypeptide=Potri.012G075600.1.p locus=Potri.012G075600 ID=Potri.012G075600.1.v4.1 annot-version=v4.1 MAIHLPNRQLFIDGEWRETVLKKRIPVINPATEQIIGDIPAATAEDVEIAVEAAKKAFSRNKGKDWSSASGAYRARYLRAIAAKITERKSELGKLEAIDS GKPLDEALWDMDDVAGCFEYYADLAEGLDTKQKAPVSLPMETFKSFVLKEPLGVVALITPWNYPLLLATWKVAPALAAGCTAILKPSELASVTCLELGEV CREVGLPPGVLNILTGLGTEAGAPLASHPHVDKVAFTGSTATGSRIMASAAQMVKPVSMELGGKSPIIVFEDVDLDKAAEWTLFGCFWTNGQICSATSRL LVHESIASEFLDKLVKWTKKIKISDPFEEGCRLGPLVSGEQYDKILKFIATAKSEGATILSGGDRPKHLNKGFFVEPTIIIDVTTSMQIWREEVFGPVLC VKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGIVWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAP SKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Potri.012G075600 [exp]	0	1	Pt-ALDH10.1
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	2.00	0.9337
AT4G25680			PPPDE putative thiol peptidase...		Potri.004G079800 [exp]	6.78	0.8935
AT3G23610		DSPTP1	dual specificity protein phosp...		Potri.010G033000 [exp]	7.07	0.9241
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.001G214201 [exp]	10.00	0.9020
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	10.39	0.9104
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	11.22	0.9221
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.016G112100 [exp]	16.15	0.8980	LAC1b
					Potri.001G466500 [exp]	16.49	0.9105
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	18.46	0.9086
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	18.54	0.9183

Compare expression of checked genes

Potri.012G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.