Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13690 1020 / 0 NAGLU, CYL1 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058100 [exp] 1035 / 0 AT5G13690 1208 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043468 [exp] 1323 / 0 AT5G13690 997 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10034116 [exp] 1252 / 0 AT5G13690 933 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10039598 [exp] 1042 / 0 AT5G13690 1173 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1) Lus10029494 [exp] 1036 / 0 AT5G13690 1174 / 0.0 N-ACETYL-GLUCOSAMINIDASE, CYCLOPS 1, alpha-N-acetylglucosaminidase family / NAGLU family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF05089 [poplar] [flax] NAGLU Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain CL0546 [poplar] [flax] Hexosaminidase PF12971 [poplar] [flax] NAGLU_N Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain CL0546 [poplar] [flax] PF12972 [poplar] [flax] NAGLU_C Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G075932.2 pacid=42783261 polypeptide=Potri.012G075932.2.p locus=Potri.012G075932 ID=Potri.012G075932.2.v4.1 annot-version=v4.1 ATGGACTCCCCTCCAGTTGCCGCCGTTTCTCTCGTCCTCCTCGCATCCTTCCTTCTCTTCTTCTCTTTCGCTCAATCTTCCACGATCGGCGTCGGTTACA TTTCCAAAATTCTCGAAATCCAGGACCGCGAACGAGCTCTTCCTTCTGTCCAAGTTGCCGCCGCTCGCGGTGTTCTGCAACGCCTCCTTCCTTCTCACTC TTCCAGCTTCGAGTTTCGAATTGTATCTAAGGAGCAATGTGGAGGGGAATCTTGCTTCATTATAAAAAATCATCCCTCGTTTACAAGGCGCGGAGCTCCT CAGATTCTAATTTCCGGGGTAACTGGAGTAGAAGTGTTGGCTGGTTTGCATTGGTATTTGAAGTATTGGTGTGGTTCGCATATATCTTGGGACAAAACAG GAGGTGTGCAGCTCAATTCGATACCTAAATTGGGTTCTCTTCCACGTCTTCAAGATGATAGTATCTTGGTTCAGAGACCTGTTCCTTGGAATTATTACCA GAACGCTGTCACATCTAGCTATTCTTTTGCTTGGTGGGATTGGAAAAGATGGGAAAAGGAAATTGATTGGATGGCTCTTCAAGGCATCAACTTGCCACTA GCATTTACAGGACAGGAAGCTATTTGGCAAAAAGTTTTCCAGAAATTTAATATTAGTAAAGAAGATTTGGATGATTTCTTTGGAGGCCCTGCATTTCTTG CATGGTCACGCATGGCAAATTTGCACAGGTGGGGAGGACCACTACCACAAAGTTGGTTTGATCAACAACTAGTTCTGCAGAAGAAAATTCTCGCCAGAAT GTATGAACTTGGAATGACTCCAGTTCTTCCAGCCTTTTCTGGAAATGTTCCTGCAGCATTAAGGAATATATTTCCTTCAGCAAAAATAACACGCTTGGGG AATTGGTTTTCAGTTAGGAGTGATGTTAGATGGTGCTGCACGTATCTCCTTGATGCAACAGATCCCTTGTTTATTGAGATTGGAAGAGCATTCATTGAGC AACAATTGACAGAGTATGGAAGTACCAGCCACATATACAACTGTGACACTTTTGATGAGAATACTCCACCTGTTGATGACCCAGAGTACATATCTTCATT AGGTGGATCAATATTTGAGGGAATGCAAAGTGGTGACAGTAATGCTGTCTGGCTGATGCAGGGGTGGTTATTTTCATATGATCCTTTCTGGAGACCTCCA CAAACGAAGGCGCTTCTACATTCAGTTCCTATAGGGAGGCTGGTAGTCCTTGATCTGTTTGCCGAAGTGAAACCCATATGGAATACTTCAGAGCAATTTT ATGGTGTCCCTTACATCTGGTGTATGCTGCACAACTTTGCAGGAAACTTGGAGATGTATGGGTATTTAGATTCGGTAGCTTCTGGACCGGTTGAAGCTCG TACCAGTGAGAACTCCACAATGGTTGGTGTTGGAATGTCAATGGAAGGTATAGAACAAAACCCAGTTGTTTATGACCTCATGTCTGAAATGGCATTTCAA AAGAACAAGGTTGATGTCAAGGAATGGATTGATTTGTATTCAGCAAGACGATATGGTCGATCAGTTCCAACAATACAAAATGCCTGGAATATACTGTACC ACACAGTTTACAATTGCACTGATGGTGCCTATGACAAAAACCGGGATGTAATTGTAGCATTCCCTGATGTTAATCCAAATCTTGTTTCGATGCTGCAAGG AAGGCATCACACCGATGTAAAACTAGTATCAAGAAGAGCGGCCCTAATAAAAAACACTGATTCATATGAACATCCTCACCTATGGTATTCAACCACTGAA GTTGTGCGTGCTTTGGAACTTTTCATTGCAGGAGGGGATGAATTATCTGGAAGCAGCACTTACAGTTATGACTTAGTTGACCTGACAAGACAAGTGTTGG CAAAATATGCAAATGAGCTGTTCTTGAAGGTCATTGAAGCCTACCGATTAAAAGACAGCCATGGAGTTGCTCACCAGAGTCAGATGTTTCTAGACCTTGT GGAAGACATAGACACACTCCTGGCATGCCATGAAGGATTTCTTCTGGGTCCATGGTTAGAAAGTGCAAAGCAACTTGCTCAAGATGAAGAACAGCAAATA CAATTTGAATGGAATGCAAGAACTCAGATAACTATGTGGTATGACAACACAGAGGTGGAAGCAAGTCTTCTTCGTGACTATGGGAACAAGTACTGGAGCG GTCTTCTAAAAGATTATTATGGTCCCCGAGCAGCTATATATTTCAATTTCTTAACCCAGAGTTTGGAAAATGGCCATGGTTTCCAGTTGAAGGCTTGGAG AAGAGAATGGATAAAGCTTACAAACAAATGGCAGAAAAGTCGGAAGATATTCCCGGTGGAGAGTAACGGAAATGCTCTGAACATATCACGGTGGCTCTAT CACAAATACCTTGGCAATCCGGATACATATGATCATTAA
AA sequence Show only first row Show all	>Potri.012G075932.2 pacid=42783261 polypeptide=Potri.012G075932.2.p locus=Potri.012G075932 ID=Potri.012G075932.2.v4.1 annot-version=v4.1 MDSPPVAAVSLVLLASFLLFFSFAQSSTIGVGYISKILEIQDRERALPSVQVAAARGVLQRLLPSHSSSFEFRIVSKEQCGGESCFIIKNHPSFTRRGAP QILISGVTGVEVLAGLHWYLKYWCGSHISWDKTGGVQLNSIPKLGSLPRLQDDSILVQRPVPWNYYQNAVTSSYSFAWWDWKRWEKEIDWMALQGINLPL AFTGQEAIWQKVFQKFNISKEDLDDFFGGPAFLAWSRMANLHRWGGPLPQSWFDQQLVLQKKILARMYELGMTPVLPAFSGNVPAALRNIFPSAKITRLG NWFSVRSDVRWCCTYLLDATDPLFIEIGRAFIEQQLTEYGSTSHIYNCDTFDENTPPVDDPEYISSLGGSIFEGMQSGDSNAVWLMQGWLFSYDPFWRPP QTKALLHSVPIGRLVVLDLFAEVKPIWNTSEQFYGVPYIWCMLHNFAGNLEMYGYLDSVASGPVEARTSENSTMVGVGMSMEGIEQNPVVYDLMSEMAFQ KNKVDVKEWIDLYSARRYGRSVPTIQNAWNILYHTVYNCTDGAYDKNRDVIVAFPDVNPNLVSMLQGRHHTDVKLVSRRAALIKNTDSYEHPHLWYSTTE VVRALELFIAGGDELSGSSTYSYDLVDLTRQVLAKYANELFLKVIEAYRLKDSHGVAHQSQMFLDLVEDIDTLLACHEGFLLGPWLESAKQLAQDEEQQI QFEWNARTQITMWYDNTEVEASLLRDYGNKYWSGLLKDYYGPRAAIYFNFLTQSLENGHGFQLKAWRREWIKLTNKWQKSRKIFPVESNGNALNISRWLY HKYLGNPDTYDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	0	1
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	2.44	0.7805
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	9.16	0.7163
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	10.48	0.6818
AT3G12590			unknown protein		Potri.010G207900 [exp]	13.85	0.7305
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	14.17	0.7336
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	16.73	0.6764
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	16.91	0.7039
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	17.20	0.6669
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	18.97	0.7162
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	20.14	0.6965

Compare expression of checked genes

Potri.012G075932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.