Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50120 417 / 9e-145 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 366 / 1e-124 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 309 / 3e-102 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 262 / 2e-83 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 248 / 1e-77 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 243 / 8e-76 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 243 / 2e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 240 / 7e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 230 / 3e-72 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 211 / 3e-64 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G070900 [exp] 599 / 0 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 312 / 4e-103 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 263 / 1e-83 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 261 / 4e-83 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 262 / 6e-83 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 258 / 1e-81 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 255 / 1e-80 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 250 / 8e-78 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G202700 [exp] 217 / 2e-66 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043466 [exp] 475 / 5e-166 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 469 / 3e-165 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10029206 [exp] 310 / 7e-102 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006460 [exp] 290 / 6e-95 AT1G24530 414 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 291 / 8e-95 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011402 [exp] 285 / 7e-93 AT1G24530 406 / 3e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 262 / 2e-83 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 257 / 1e-81 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 255 / 6e-81 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 246 / 3e-77 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.012G076000.1 pacid=42783126 polypeptide=Potri.012G076000.1.p locus=Potri.012G076000 ID=Potri.012G076000.1.v4.1 annot-version=v4.1 ATGTCAGACCACCATGCTAGTTACTCAGATTATGATTCTCAATCACGCTCCGACGACCACCTTCAAACAAACCTGCCTGCACTTTATTCACAGCCAAGCC TCCCATCACTACCTTCCCTCACCTCAAACCCCGATCACTACCAAGAAATCCTATCCACCACCCACCACCACTGCCTCACCACTCTTAAAGGCCACACCTC TTATATATCCTCACTAAACCTTGTTGGGAAGTTCCTTTACAGCGGCTCCGGCAAGGAAATCCGATTGTGGAAGGGAAACTCTTTAGATTCTGAAATAGAT CATGAAAACCTAAGCAACAACGTTGTGGCTGTGGGAAAAGGTGCGGTGAAGTCCCTTGTTGTTCTGGAAGATAAACTCTTTAGTGCTCATCAAGATCACA AAATCCGAGTATGGAAAATCAATAACCAGGAATCTGATAAGCAGAAATACACACGTTTAGCCACTTTACCAACACTTGGTGACCGTGCCTTCAAAAGTCT GTTGCCCAAGAATCAAGTTCAGATTCGCAGGCACAAAACATGCACATGGGTTCATCATGTTGACACAGTATCTGCAATAGCCTTGTCGAGTGATGAGTCC CTTCTCTACTCCGTTTCATGGGATCGGACAATTAAAATATGGAGAACTAATAACTTCAAGTGCTTGGAGTCGGTAGCCAACGCACATGATGATGCTATAA ATGCAGTGGCATTGTCGAATGATGACAGTGTTTATACCGGATCGGCCGACAAGAATATCAAAGTGTGGAGGAAAAGTTCAAAAGAGAGCAAACATTCCTT AGTTGCTACGCTAGAAAAACACAACTCTGGGATTAATGCCTTGGCACTAAGCACTGATGGGTCTGTTTTATACTCTGGTGCATGTGACCGATCAATAGTA GTATGGGGGAAGGACGGTGGTGGCAATATGGTGGTTGTGGGAGCCCTAAGGGGCCATTCACAGTCCATATTGTGCTTAGCTGTTGTGTCTGATTTGTTGT TTAGTGGTTCCGCAGATAAAACTATTAGAATTTGGAGAGGTTCTGACAAAAGTTACTCTTGCTTGGCAGTTTTAGAAGGGCATAGAGGCCCTGTCAAGTG CTTGACAGCAACGATTGACCATGACAACACAACCGATGCATCGTATCTTCTTTACAGTGGGAGTTTGGACTGTGATATCAGAGTGTGGCAAATCAACGTC CCTCTCCTATAG
AA sequence Show only first row Show all	>Potri.012G076000.1 pacid=42783126 polypeptide=Potri.012G076000.1.p locus=Potri.012G076000 ID=Potri.012G076000.1.v4.1 annot-version=v4.1 MSDHHASYSDYDSQSRSDDHLQTNLPALYSQPSLPSLPSLTSNPDHYQEILSTTHHHCLTTLKGHTSYISSLNLVGKFLYSGSGKEIRLWKGNSLDSEID HENLSNNVVAVGKGAVKSLVVLEDKLFSAHQDHKIRVWKINNQESDKQKYTRLATLPTLGDRAFKSLLPKNQVQIRRHKTCTWVHHVDTVSAIALSSDES LLYSVSWDRTIKIWRTNNFKCLESVANAHDDAINAVALSNDDSVYTGSADKNIKVWRKSSKESKHSLVATLEKHNSGINALALSTDGSVLYSGACDRSIV VWGKDGGGNMVVVGALRGHSQSILCLAVVSDLLFSGSADKTIRIWRGSDKSYSCLAVLEGHRGPVKCLTATIDHDNTTDASYLLYSGSLDCDIRVWQINV PLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50120			Transducin/WD40 repeat-like su...		Potri.012G076000 [exp]	0	1
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	13.41	0.7775
AT1G04700			PB1 domain-containing protein ...		Potri.001G052000 [exp]	17.43	0.7366
AT3G18360			VQ motif-containing protein (....		Potri.012G055900 [exp]	20.44	0.7686
					Potri.005G038600 [exp]	23.74	0.7611
AT1G73240			unknown protein		Potri.003G213050 [exp]	29.49	0.7654
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.002G027501 [exp]	34.49	0.7518
AT4G04980			unknown protein		Potri.011G047100 [exp]	36.82	0.7478
AT1G52630			O-fucosyltransferase family pr...		Potri.001G171500 [exp]	41.02	0.7507
					Potri.011G039812 [exp]	68.92	0.7246
AT3G57620			glyoxal oxidase-related protei...		Potri.005G047701 [exp]	83.00	0.6810

Compare expression of checked genes

Potri.012G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.