Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65200 469 / 3e-160 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G40140 347 / 5e-113 RING/U-box superfamily protein with ARM repeat domain (.1) AT5G62560 316 / 6e-101 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 297 / 5e-94 PUB39 PLANT U-BOX 39 (.1) AT2G23140 123 / 3e-29 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54850 109 / 6e-25 ATPUB14 plant U-box 14 (.1) AT2G28830 104 / 3e-23 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 102 / 2e-22 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 99 / 1e-21 PUB15 Plant U-Box 15 (.1) AT5G67340 98 / 3e-21 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071200 [exp] 660 / 0 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 267 / 1e-83 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.008G035700 [exp] 119 / 3e-28 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 118 / 7e-28 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 116 / 3e-27 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.007G051000 [exp] 115 / 1e-26 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 114 / 2e-26 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G226500 [exp] 108 / 1e-24 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 107 / 4e-24 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043464 [exp] 534 / 0 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10034119 [exp] 534 / 0 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10039470 [exp] 338 / 6e-109 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10039447 [exp] 219 / 7e-64 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10016016 [exp] 120 / 2e-28 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10011514 [exp] 120 / 5e-28 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10012260 [exp] 119 / 6e-28 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10019308 [exp] 117 / 3e-27 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10037970 [exp] 116 / 5e-27 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 114 / 1e-26 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.012G076400.1 pacid=42784205 polypeptide=Potri.012G076400.1.p locus=Potri.012G076400 ID=Potri.012G076400.1.v4.1 annot-version=v4.1 ATGCCCACAACCGCCGCATCCTTTCTCAATCCCAAACACCAAGAGAGCAAAACCCCTTCCATTTTCCCACCACCACCACAAGCCATGGGTGGAAATGGCA AACGGAGATGGAACATCTCTTTCTATTCTCGCTCAAAAACTACTCAAACCCAACAACTTCCTCCTAAAGAATTCCTCTGTCCCATTTATGGATCCTTAAT GTCCGACCCTGTTGTTGTCTCCTCTGGCCAAACCTTCGAGCGGCTTTCTGTCCAAGTGTGCCGCGATTTAGGCTTTACCCCCACCCTCGAAGACAACATC CTCCCTGATTTCACCACAGTAATCCCCAATTTAGCCATCAAATCAACGATTCTCCACTGGTGTGATACTTCAGGCACCCAGCACCCTGGTGCACCCGATT ACTCCTCTCTCGAGGAAATTGTCCGCCAAAAAATGAAATTATCGTCATCGAAGTCGATGCAAGTAAATATGACCCGTCCAGATATTAGAGTTTCCGAGAA GGAGCTCCTTGAGGGAGTAGCTGAAAAGCCTCCTGTTCTTTTCTCCCGCGCCATCACTGAGTTGACTCACCGAGTCAACCATTTCTACTCCAGCTCCTCC GAAGAACCCGTGATTGTCAAGACAGCCGCCACTCCAGCAGCTAGTCCGCTCACTCCTTTGCCTCTGGTGACTCGGCCAGCGTGCTATTCTTCCACATCCT CGTCGGCCAATTCGATTACAGAATCCGAAGACCCTTCTTCGATTTCTTCGTGCTCGCGTGAAGAAGATGAGATAGTGGAAAAGCTTCAAAGTGTTGATGT ACGTGATCAAGAAGAAGGTGTGATTTGGCTGCGAAAGATCACGAGAACGAAAGTAGAAATCAGAGTTTCACTTTGTACGCCTCGACTACTCCCTGCTCTT CGTGCTTTAATTGCTTCACGACATTTTGTTGTCAAGACAAATGCTATTGCTTCACTTGTTAATCTGTCATTAGAGAAAGCAAACAAGGTGAAAATCGTGC GGTCGGGTTTTATTCCTATATTGATTGATGTGTTAAAAGGAGGGTTTAGTGAAGCGCAAGAGCACGCGGCTGGTGCGTTCTTTAGTTTAGCTCTAGAGGA TCAGAATAGAATGGCGATTGGTGTTTTAGGTGCATTGCAGCCGTTGATGCAGGCGTTGAAGGCGGAGAGCGAGAGAGCACGCCATGATTCGGCAATGGCG TTGTACCATTTGAGTTTAATGCAGAGTAATCGGGTTAAATTGGTCAAACTCGGTGCTGTTTCGATGTTGTTGAGTATGGTGAATTCTGGTGATTTGGCAA GCAGGTTGCTGCTTGTGCTGTGTAATTTGGCTGCTTGTAATGAAGGGAGATCGGCCATGCTTGATTCGAATGCGGTGGCAATACTGGTAGGGATCTTGAG GGAGGGTGGTGGAGGGCATTCGGAGGTAATTCAGGAGAGTTGTGTGGCTGCATTGTTTGCGTTGAGTCATGGGAGTATGAGGTTTAAGGGATTGGCTAAG GAGGCAAGAGCTGAGGAGGTGTTGAGGGAGATTGAAGAGCGAGGGAGCAAGAGAGCCAGAGAGAAAGCGAAGAGGATCTTGATGATGATGATGAGAGGGA GTAACGAGGAGGTTGAATGGGAGGAGGAGGTTGACTGGGAGGAGGTTTTGGGATTTGGTGGAATCAGAGGCGGCGGGAGAAGCTTGCATGGTCCAAACTC TACCGATTTTTGA
AA sequence Show only first row Show all	>Potri.012G076400.1 pacid=42784205 polypeptide=Potri.012G076400.1.p locus=Potri.012G076400 ID=Potri.012G076400.1.v4.1 annot-version=v4.1 MPTTAASFLNPKHQESKTPSIFPPPPQAMGGNGKRRWNISFYSRSKTTQTQQLPPKEFLCPIYGSLMSDPVVVSSGQTFERLSVQVCRDLGFTPTLEDNI LPDFTTVIPNLAIKSTILHWCDTSGTQHPGAPDYSSLEEIVRQKMKLSSSKSMQVNMTRPDIRVSEKELLEGVAEKPPVLFSRAITELTHRVNHFYSSSS EEPVIVKTAATPAASPLTPLPLVTRPACYSSTSSSANSITESEDPSSISSCSREEDEIVEKLQSVDVRDQEEGVIWLRKITRTKVEIRVSLCTPRLLPAL RALIASRHFVVKTNAIASLVNLSLEKANKVKIVRSGFIPILIDVLKGGFSEAQEHAAGAFFSLALEDQNRMAIGVLGALQPLMQALKAESERARHDSAMA LYHLSLMQSNRVKLVKLGAVSMLLSMVNSGDLASRLLLVLCNLAACNEGRSAMLDSNAVAILVGILREGGGGHSEVIQESCVAALFALSHGSMRFKGLAK EARAEEVLREIEERGSKRAREKAKRILMMMMRGSNEEVEWEEEVDWEEVLGFGGIRGGGRSLHGPNSTDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.012G076400 [exp]	0	1
AT4G20860			FAD-binding Berberine family p...		Potri.011G167101 [exp]	4.47	0.8567
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	4.79	0.8212
AT1G13340			Regulator of Vps4 activity in ...		Potri.004G100900 [exp]	4.89	0.8602
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.011G070100 [exp]	6.78	0.8603	WRKY65.2
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	8.48	0.8370
AT3G60380			unknown protein		Potri.002G136600 [exp]	11.22	0.8245
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.013G019200 [exp]	11.57	0.7763
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.005G219100 [exp]	11.74	0.7737
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	13.74	0.8474	NHL25.1
AT5G47070			Protein kinase superfamily pro...		Potri.014G052700 [exp]	19.05	0.8370

Compare expression of checked genes

Potri.012G076400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.