Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27520 657 / 0 Glycosyl hydrolase family 47 protein (.1) AT5G43710 351 / 1e-112 Glycosyl hydrolase family 47 protein (.1) AT1G30000 144 / 4e-36 MNS3 alpha-mannosidase 3 (.1) AT1G51590 142 / 1e-35 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 135 / 2e-33 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071400 [exp] 776 / 0 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 356 / 1e-114 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.018G141100 [exp] 144 / 1e-36 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 143 / 9e-36 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.008G007500 [exp] 138 / 2e-34 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042143 [exp] 640 / 0 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 348 / 4e-111 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 333 / 8e-106 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 292 / 1e-92 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10034820 [exp] 142 / 8e-36 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 142 / 9e-36 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 139 / 1e-34 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 134 / 1e-32 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 102 / 2e-22 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 86 / 1e-17 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01532 [poplar] [flax] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Potri.012G076600.3 pacid=42783830 polypeptide=Potri.012G076600.3.p locus=Potri.012G076600 ID=Potri.012G076600.3.v4.1 annot-version=v4.1 ATGTCGATTTGCAGGTTTCTGAAGTGGGTTGTGTTGCTTCTTGTCATGTTTCCTAGTTTATTTGACCCTTCACTGTCACACTTTGATTCAGCTAAGAAGA AACAAATGCGAGAGAAAGTCCGAAAGATGTTCTACCATGCATATGAGAACTACATGACACATGCATTTCCGCATGATGAGCTCAAGCCTCTTACCAGAAG TTTCACTGACTCACTTAGTGAGCTTGGAAATTTGAAGCTTGAGCACTTACCACAAAACTATAATGGAACTGCCCTTACACTCATTGAATCATTGTCTAGT CTTGTTATTTTGGGTAACTACACAGAGTTTGAAAGGGCAGTTCTCTGGCTTTCTGAAAATCTTTCATTTGATGTTGATGCAAGAGTAAACCTTTTTGAGG GCAACATAAGAGTTCTTGGAGGACTTGTTTCTGCTCATATTCTTGCAACTGATTCTAAGAACAGGCTGGTTCAAGGATCTTACAAGAATCAGCTACTTGA TCTGGCTGAAGATCTAGGACAACGCTTCCTACCTGCATTTGATACGCCCACTGGATTGCCATATGCCTGGATTAACTTAAAGTATGGAGTCATGAAGAAT GAGACTACTGAAACAAGCACCTCAGGATGTGGTTCTCTGATTCTTGAAATGGGAGCCTTATCACGATTAACTGGTGACCCTAAATATGAGTCTGCATCCT TGCGGGCTCTTCGAAAGTTGTGGAGTATGCGTAGTTCTTTAAATTTGCTAGGAACAACACTCGATGTGGAAACTGGGGAATGGATTGAGCATTCATCAGG GATCGGTGCTGGGGTTGATTCATTCTATGAGTATCTATTCAAGGCTCACATTCTTTTTGGAAAGGAGGACTTCTGGAGAATGTTTCATTCTGCTTATCTT GCGGTGCAGAAATATTTCAGACATGGTCCATGGTACCATGAAGCTGATATGAGGACTGGAAAAGCAACGTATTGGCAACTGACAAGCCTTCAAGCATTCT GGCCTGGCCTACAGGTTCTTGTTGGGGATATTGAAGCTGCTAACTCATCACACCGTGAATTTGTACATGTATGGAAGAAGTTTGGGGTGCTACCAGAAAG GTATTTGCTGGACCATCAAATGTTGCACCCTACAGAGAAGTACTATCCACTGCGCCCTGAATTAGCAGAATCAACATTCTACTTATATCAAGCTACTGAA GGTCTTGATTGTTTTATTTTGCAGTTCTTTAGTTTTAGCTTTTCCCTGGAAGTTTTAGATTTTCACTTTATTTCTTTCAGAATTATTTCTTTAAAATGCT TGGGTCAGGTGAATGTGTGCATCCATATACCATTTGCAACTGCCAGTAACATAAGGGGAAAGTTGCCATTTACTAGACCTTTCAAACGTAGAAAATTTGC AAGGCCATCAGATCCGTGGTACATAGAAGTGGGTGAAGCAATTGTTGATTCTCTTAATTTATACACCAAAGTCGAAGGAGGATTTGCAAGCATTAGGGAT GTCACAACTATGCAAACAGAAGATCATCAGCATAGTTTCTTTCTTGCTGAAACGTGCAAGTATTTGTATCTTCTCTTTGATGATTCATTTTTGGTTGATC GGAATTATATATTCACTACCGAGGGTCACCCTTTGCCTGTGCTAAGTGCTTGGCACGAGAGACTGCCAGAGATATATATCCCATCAAACTGGACTTATGT CAAGAAAGAAAAGCCAAAACGAGCAAGTGCAATGTCTCTGCAAGTCTGTCCTGCATTGAGTTTGAATTCAAGACATGGTGAACAACTGGTTGAGAGTGCT TGCCACATCCCTGATGCACGAAATGACCACAAGTGTTTCAGTGATGAAGAATGTGGAGTTGACTCAACTAATTGTAGACGAAGATCATGTAGCCTGGGCG GTTACTGTGGGCTATGGTTGATCATATGA
AA sequence Show only first row Show all	>Potri.012G076600.3 pacid=42783830 polypeptide=Potri.012G076600.3.p locus=Potri.012G076600 ID=Potri.012G076600.3.v4.1 annot-version=v4.1 MSICRFLKWVVLLLVMFPSLFDPSLSHFDSAKKKQMREKVRKMFYHAYENYMTHAFPHDELKPLTRSFTDSLSELGNLKLEHLPQNYNGTALTLIESLSS LVILGNYTEFERAVLWLSENLSFDVDARVNLFEGNIRVLGGLVSAHILATDSKNRLVQGSYKNQLLDLAEDLGQRFLPAFDTPTGLPYAWINLKYGVMKN ETTETSTSGCGSLILEMGALSRLTGDPKYESASLRALRKLWSMRSSLNLLGTTLDVETGEWIEHSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYL AVQKYFRHGPWYHEADMRTGKATYWQLTSLQAFWPGLQVLVGDIEAANSSHREFVHVWKKFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATE GLDCFILQFFSFSFSLEVLDFHFISFRIISLKCLGQVNVCIHIPFATASNIRGKLPFTRPFKRRKFARPSDPWYIEVGEAIVDSLNLYTKVEGGFASIRD VTTMQTEDHQHSFFLAETCKYLYLLFDDSFLVDRNYIFTTEGHPLPVLSAWHERLPEIYIPSNWTYVKKEKPKRASAMSLQVCPALSLNSRHGEQLVESA CHIPDARNDHKCFSDEECGVDSTNCRRRSCSLGGYCGLWLII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	1.00	0.8561
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Potri.017G033400 [exp]	8.00	0.6693
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	11.22	0.7481
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	14.96	0.7313
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433700 [exp]	17.88	0.7556
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	21.67	0.7532
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	22.75	0.7400
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	28.61	0.7281
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.014G100700 [exp]	35.72	0.6957
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	37.94	0.6512

Compare expression of checked genes

Potri.012G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.