Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35530 409 / 6e-147 Ribosomal protein S3 family protein (.1) AT2G31610 407 / 3e-146 Ribosomal protein S3 family protein (.1) AT3G53870 404 / 7e-145 Ribosomal protein S3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071700 [exp] 443 / 1e-160 AT5G35530 421 / 3e-151 Ribosomal protein S3 family protein (.1) Potri.006G222100 [exp] 439 / 6e-159 AT5G35530 425 / 5e-153 Ribosomal protein S3 family protein (.1) Potri.018G049100 [exp] 437 / 6e-158 AT5G35530 424 / 8e-153 Ribosomal protein S3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030503 [exp] 412 / 5e-148 AT5G35530 411 / 2e-147 Ribosomal protein S3 family protein (.1) Lus10033442 [exp] 411 / 1e-147 AT2G31610 413 / 3e-148 Ribosomal protein S3 family protein (.1) Lus10012857 [exp] 411 / 2e-147 AT2G31610 411 / 3e-147 Ribosomal protein S3 family protein (.1) Lus10030502 [exp] 411 / 2e-147 AT5G35530 411 / 2e-147 Ribosomal protein S3 family protein (.1) Lus10016705 [exp] 64 / 1e-12 AT1G71090 134 / 2e-37 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00189 [poplar] [flax] Ribosomal_S3_C Ribosomal protein S3, C-terminal domain CL0007 [poplar] [flax] KH PF07650 [poplar] [flax] KH_2 KH domain
Representative CDS sequence Show only first row Show all	>Potri.012G076800.2 pacid=42783220 polypeptide=Potri.012G076800.2.p locus=Potri.012G076800 ID=Potri.012G076800.2.v4.1 annot-version=v4.1 ATGGCTACTCAAATAAGTAAGAAACGCAAGTTTGTTGCGGATGGAGTTTTCTATGCGGAACTTAATGAGGTGTTGACAAGAGAACTAGCGGAGGATGGTT ACTCTGGTGTTGAAGTTAGGGTTACTCCCATGCGCACTGAGATCATCATCAGGGCTACTCGTACCCAAAATGTTCTTGGTGAGAAGGGAAGGAGGATCAG AGAGCTGACTTCCGTTGTTCAGAAACGTTTCAAGTTTCCTGAGAATGGTGTTGAGCTCTATGCTGAGAAAGTTAACAACAGGGGTCTCTGTGCCATTGCT CAGGCTGAGTCTCTTCGTTACAAGCTCCTTGGAGGCCTTGCTGTTCGCAGGGCTTGTTATGGAGTCTTAAGATTTGTAATGGAGAGTGGGGCAAAAGGAT GCGAGGTTATTGTGAGTGGAAAGCTCCGGGCACAGCGTGCCAAATCTATGAAATTTAAGGATGGGTACATGATTTCCTCTGGCCAACCTGTTAAAGAGTA TATTGATTCAGCTGTTAGGCACGTTCTTCTTAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGACTGGGATCCTAAGGGCAAGGTGGGGCCA ATGACACCATTGCCTGATCTGGTCACCATCCATCCTCCCAAGGAAGAAGAAGAGTATGTTCCACCAGTGATGACAACCAATATTGAGATTCCAGTAGCAT AA
AA sequence Show only first row Show all	>Potri.012G076800.2 pacid=42783220 polypeptide=Potri.012G076800.2.p locus=Potri.012G076800 ID=Potri.012G076800.2.v4.1 annot-version=v4.1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIA QAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKVGP MTPLPDLVTIHPPKEEEEYVPPVMTTNIEIPVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	0	1
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	1.00	0.8623
AT3G19508			unknown protein		Potri.009G094200 [exp]	1.41	0.8613
AT4G35490		MRPL11	mitochondrial ribosomal protei...		Potri.007G058600 [exp]	2.44	0.8541
AT3G49910			Translation protein SH3-like f...		Potri.007G085200 [exp]	3.46	0.8317	Pt-RPL26.2
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.003G181200 [exp]	3.74	0.8187
AT4G35850			Pentatricopeptide repeat (PPR)...		Potri.001G341400 [exp]	7.74	0.8288
AT5G50810		TIM8	translocase inner membrane sub...		Potri.012G103400 [exp]	8.48	0.8036
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.001G046600 [exp]	9.79	0.8124
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	11.83	0.7929
AT4G26400			RING/U-box superfamily protein...		Potri.017G038300 [exp]	12.00	0.7861

Compare expression of checked genes

Potri.012G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.