Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) AT5G57580 380 / 1e-124 Calmodulin-binding protein (.1) AT4G25800 379 / 2e-124 Calmodulin-binding protein (.1.2) AT2G18750 374 / 1e-122 Calmodulin-binding protein (.1.2.3) AT2G24300 343 / 1e-110 Calmodulin-binding protein (.1.2) AT4G31000 336 / 2e-108 Calmodulin-binding protein (.1.2) AT1G73805 270 / 2e-84 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 243 / 7e-73 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071800 [exp] 1046 / 0 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.004G035100 [exp] 379 / 3e-124 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 368 / 4e-120 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 367 / 5e-120 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G095300 [exp] 367 / 3e-119 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 366 / 3e-119 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.018G111200 [exp] 352 / 3e-114 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.012G054900 [exp] 322 / 1e-104 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 315 / 2e-101 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034121 [exp] 670 / 0 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10011248 [exp] 369 / 2e-120 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 367 / 3e-119 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10043463 [exp] 365 / 5e-118 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10019056 [exp] 362 / 1e-117 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 360 / 6e-117 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10001630 [exp] 354 / 1e-114 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 354 / 2e-114 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10029861 [exp] 299 / 1e-93 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 291 / 1e-90 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [poplar] [flax] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Potri.012G077000.1 pacid=42782676 polypeptide=Potri.012G077000.1.p locus=Potri.012G077000 ID=Potri.012G077000.1.v4.1 annot-version=v4.1 ATGGCTCAAAAGAGGCAACCGGAGGAGGGTAAGCCTCGTTCTGATGGGAATAATAGCCCTGACGAAAAGAGGAGGAGGTTCGATTTGAAAAGTGTGGTTG AGGACGTGATTAAAATGCAATCAGTTCAGCATTTGCTAGAGCCAGTTTTGGAGCCGTTGATACGTAGTGTGGTAAAAGAGGAAGTCGAATTAGCTCTAAG GAAACATTTGGCCAACATGAAAAGGAACATCGGGAAAGAGATAGGTTCTTCTGAATCAAAAAGCTTAAAACTGCTGTTTGCAAACAACCTCTCACTTCCA GTGTTCACTGGAGCTCGTATTGAAGGAGAAGAAGGTCCAGTATTGAAAGTGGTTTTGATGGATACTCTTACTGGGAAAATTGTCAACTCTGGTCCCGAGT CTTCTTCCAGAGTGGAAATTGTCGTTCTTGAGGGTGATTTTGATGGTGATGAGGGTGAGAATTGGACACCTGAAGAATTCAAGACTAACATTGTGAGGGA GAGAGAAGGAAAGAAACCCCTTCTTACAGGAGATGTACTCCTCAATCTTAAAGAGGGGATTTGTTTGGTTGGTGAGATTTCATTTACAGATAATTCAAGC TGGACAAGAAGCCGCAAGTTCAGGCTTGGTGTAAGAGCTGTGGACAACTTTGATGGTACTAGCATAAGGGAATCGAAGACAGAATCCTTCATTGTCAGGG ATCACCGAGGAGAATTGTACAAGAAGCACCATCCCCCATCTCTGTTTGATGAAGTTTGGAGATTAGAGAAGATTGGCAAAGATGGAGCTTTCCATAAGCG ATTGAGTCGGGAGAATATCAATAGTGTGAAGGATTTCCTGACCCTTCTTTTTATAGACCCTTCACGGCTTCGCTATATTCTTGGCACAGGCATGTCCGCT AAGATGTGGGAAGTTACTGTGGAGCATGCTCGAACCTGTGTGATTGATAAGAGAATATTCTTGTATTGCCCTCCTGTTTCTCAACAGAAAACTGGTGTCG TCTTTAATGTCGTGGGACAAGTTATAGGATTGCTTTCAGAATGCCAGTATGTTCCTCTTGATAAGCTTTCTGAAACAGAAAAGGCTGATGCTCAGAACTT GGTAATCACTGCATTTGAGCACTGGGAGCAAGTCATATCTTTTGATGATGAAGCCTCTCTGGTGGGCGGCTCCTCACAATTATCTGATGTTCGTTACACC TCAAGCTCGCCCCGGACAGAGAATTCTTGTGGAAGCAAGTTTTTGGCTTCACAAAAAATAGAAGGGTTTGATTATGCACAGCCAAGTGCATCTTCTCCAG ACATCATGTCATCAATATATACTGTTGGGGGTGGGAGTGGCTTGGATGATTATGCCTTGCAGGGTATTGAAAGTTTGGGTCTTAGATACGACCAGACTTT GAACTTCCCTAGCCAAGTCTCCAACTCCCTCATCTGTGACACTGATTCCTTGGTTCATGCTTTCTGTGACGAGGAGCATCTGCGGTTTTTTGATACAGAT CTTCAGACTCAGAACCTTGGTTTAGAAACACAAGCTGATTTACAAAGTGCTGTTGATAGCTTCCTGTTGGCACGCTCTACAGCCGTTGCTGTTGATAAGG CTAAGAGGAGATGGGCAAAGATCTCTAGCGTGTTGAAATGGTTCTCTATCAGGAAGCTCGTGGCTACAAGAAAAAATGGTGTTCGAGGAATTTATAGATA TTAG
AA sequence Show only first row Show all	>Potri.012G077000.1 pacid=42782676 polypeptide=Potri.012G077000.1.p locus=Potri.012G077000 ID=Potri.012G077000.1.v4.1 annot-version=v4.1 MAQKRQPEEGKPRSDGNNSPDEKRRRFDLKSVVEDVIKMQSVQHLLEPVLEPLIRSVVKEEVELALRKHLANMKRNIGKEIGSSESKSLKLLFANNLSLP VFTGARIEGEEGPVLKVVLMDTLTGKIVNSGPESSSRVEIVVLEGDFDGDEGENWTPEEFKTNIVREREGKKPLLTGDVLLNLKEGICLVGEISFTDNSS WTRSRKFRLGVRAVDNFDGTSIRESKTESFIVRDHRGELYKKHHPPSLFDEVWRLEKIGKDGAFHKRLSRENINSVKDFLTLLFIDPSRLRYILGTGMSA KMWEVTVEHARTCVIDKRIFLYCPPVSQQKTGVVFNVVGQVIGLLSECQYVPLDKLSETEKADAQNLVITAFEHWEQVISFDDEASLVGGSSQLSDVRYT SSSPRTENSCGSKFLASQKIEGFDYAQPSASSPDIMSSIYTVGGGSGLDDYALQGIESLGLRYDQTLNFPSQVSNSLICDTDSLVHAFCDEEHLRFFDTD LQTQNLGLETQADLQSAVDSFLLARSTAVAVDKAKRRWAKISSVLKWFSIRKLVATRKNGVRGIYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62570			Calmodulin binding protein-lik...		Potri.012G077000 [exp]	0	1
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089800 [exp]	8.48	0.7848
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.001G242600 [exp]	13.85	0.8036
AT5G24490			30S ribosomal protein, putativ...		Potri.015G002200 [exp]	15.03	0.8203
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.003G032800 [exp]	18.97	0.8103	Pt-PLD1.1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	25.09	0.8002	Pt-BRI1.2
AT2G41190			Transmembrane amino acid trans...		Potri.006G038700 [exp]	26.90	0.8088
AT4G16447			unknown protein		Potri.016G009200 [exp]	32.24	0.8004
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Potri.005G236102 [exp]	38.53	0.7728
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	40.98	0.7643	Pt-TCP1.1
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	49.64	0.7863

Compare expression of checked genes

Potri.012G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.