Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62575 131 / 2e-41 SDH7B, SDH7 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein AT3G47833 114 / 2e-34 SDH7A, SDH7 succinate dehydrogenase 7A, succinate dehydrogenase 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072100 [exp] 158 / 5e-52 AT5G62575 131 / 4e-41 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042141 [exp] 117 / 8e-35 AT5G62575 111 / 2e-32 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein Lus10004231 [exp] 86 / 1e-23 AT5G62575 80 / 3e-21 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein Lus10034122 [exp] 86 / 6e-23 AT5G62575 83 / 1e-21 succinate dehydrogenase 7B, succinate dehydrogenase 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G077101.1 pacid=42783861 polypeptide=Potri.012G077101.1.p locus=Potri.012G077101 ID=Potri.012G077101.1.v4.1 annot-version=v4.1 ATGGGCTTGTTACTGAAGAATTACTCGACAATCACTTCTCACTACCGATCTCAATCTCAGACACAGGGCGCCTTCTCTCTTTCGCGTCGCGGATTCCATG TTGAACCTGGTCCTCGCGAGCAAGCTCTCCTGGCCGAAGATCCATCTCTTAAGCGATTCAAATCACATAAGAAGAGTGTGTGGAGACTCAAAAGATTTGG AGATGTTCTGACACTTGTTGTTGTAGCAGGCTGTTGCTATGAAATTTATGTCAAAACAGTAATGCGGGAAGAAGCTCGGAAACAGGCAAAGGAAAGTGCA TGA
AA sequence Show only first row Show all	>Potri.012G077101.1 pacid=42783861 polypeptide=Potri.012G077101.1.p locus=Potri.012G077101 ID=Potri.012G077101.1.v4.1 annot-version=v4.1 MGLLLKNYSTITSHYRSQSQTQGAFSLSRRGFHVEPGPREQALLAEDPSLKRFKSHKKSVWRLKRFGDVLTLVVVAGCCYEIYVKTVMREEARKQAKESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.012G077101 [exp]	0	1
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.002G257500 [exp]	3.74	0.8595
AT3G52580			Ribosomal protein S11 family p...		Potri.001G218700 [exp]	8.71	0.8539
AT3G57320			unknown protein		Potri.006G046800 [exp]	9.48	0.7868
AT5G18800			Cox19-like CHCH family protein...		Potri.010G026000 [exp]	10.00	0.8402
AT5G62200			Embryo-specific protein 3, (AT...		Potri.001G193500 [exp]	10.90	0.7388
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.019G131200 [exp]	18.52	0.8330	EIF2.2
AT1G06200			Peptidase S24/S26A/S26B/S26C f...		Potri.002G037900 [exp]	20.97	0.7902
AT5G18420			unknown protein		Potri.017G122600 [exp]	26.26	0.7656
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.005G194700 [exp]	29.15	0.7131
AT5G61170			Ribosomal protein S19e family ...		Potri.004G118800 [exp]	29.91	0.8376	RPS19.1

Compare expression of checked genes

Potri.012G077101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.