Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 1376 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 901 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G11560 101 / 1e-21 bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 70 / 5e-12 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 69 / 7e-12 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 66 / 1e-10 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 62 / 4e-09 Transcription elongation factor (TFIIS) family protein (.1) AT5G09850 47 / 6e-05 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072800 [exp] 2216 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 2063 / 0 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 2053 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G104300 [exp] 102 / 5e-22 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 95 / 1e-19 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 71 / 6e-12 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.005G241400 [exp] 65 / 4e-10 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.003G127300 [exp] 57 / 2e-08 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033410 [exp] 1440 / 0 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 976 / 0 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 99 / 1e-20 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 99 / 2e-20 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10017630 [exp] 76 / 2e-13 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10009128 [exp] 76 / 2e-13 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 75 / 4e-13 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 74 / 9e-13 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.012G077500.2 pacid=42783954 polypeptide=Potri.012G077500.2.p locus=Potri.012G077500 ID=Potri.012G077500.2.v4.1 annot-version=v4.1 ATGCTGCATGGAAGGGAAGGTGAGGAGAGGAAAACGGATCATCGGCACATGTGGACAGGTCCCTCGCGTGGTAATTCGGTTGTAGCTGGTGACGATGTTG TTTCTGATTCTTTTTTCAAGGATGGACGCAAGATCAGTGTTGGAGACTGTGCTTTGTTCAAACCACCCCAGGACTCTCCACCGTTCATTGGAATAATTCG TTGGCTGACTACCAGTAAAGAGAACAAGTTAAAGTTAGGTGTGAATTGGCTCTATCGACGTTCTGAAGTAAAACTTGGCAAAGCCATCCTATTGGAAGCT GCGCCAAACGAAATATTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCACTACTCCATCCGTGTAAAGTTGCCTTCCTTCCCAAAGGTGTTGAAC TTCCATCAGGAATTTGCTCATTTGTGTGCCGGCGAGTTTATGACATCACAAACAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACGTCA AGAAGAAGTAGATCACCTATTGAATAAAACACGTTTAGAAATGCATGCAACAGTGCAGCCTGGTGGACGCTCTCCAAAGCCAGTGAATGGCCCAACATCG ACATCCCAGTTAAAACCTGGTTCAGATAGTGTGCAGAATAGTGTTTCATCCTTTCCTTCTCAAGGCAAAGGAAAGAAAAGAGAGAGAATAGATCAGGGCT CTGAGCCTGTGAAACGAGAGCGTTTTACAAAAATGGATGATGGTGATTCTGGTCACAGTAGACCAGAAAGCATGTGGAAATCTGAGATTTCTAAATTTAC AGACAGAGGGGGACTAGTGGATTCTGAAGGTGTTGAGAAATTGGTGCATCTAATGATGCCTGAGAGAAATGATAAAAAAATAGACTTGGTTGGCCGGTCA ATTCTTGCTGGTGTGGTTGCAGCCACAGATAAGTTTGATTGCCTAAACCGGTTTGTGCAGCTTAGGGGCTTGCCTGTGTTTGACGAATGGCTGCAGGAGG TCCATAAAGGGAAGAATGGTGATGGCAGTAGCCCCAAGGATGGCGATAAATCTGCTGAGGAATTTCTGTTAGTTTTGCTTTGGGCACTTGATAAGCTCCC TGTAAATCTCCATGCTCTGCAAATGTGTAATATTGGCAAATCTGTGAATAATCTGCGCACACATAAGAACTTGGAAATACAGAAGAAAGCAAGGAGCTTG GTTGACACATGGAAGAAACGTGTTGAGGCTGAAATGGATGCCAACACAAAGTCTGGCTCTAACCAAGGTGTCTCCTGGACTGCCAGATCACGTCTTCCTG AAATTTCACATGGTGGGAACAGGCAATTTGGTGTATCCTCTGAGGTTGCAATGAAGAGCACAGTTGTGCAACTCTCTGCTTCGAAAACTGGTTCAGTCAA GGTTGTACAGGGGGAAACTGTTGCCAGGTCTGCATCAACATCCCCAGGACCTATAAGATCGACAGCATCACCTGGATCAGCGGGTAATAATTCAAAAGAA GCACATCCCCGAAACACTGGTGCCAGTGGTGCCTCCGATCCATCTGTAGTGGTAGCAAGGGATGAGAAAAGCAGCAGTTCTAGCCAGTCCCACAACAATA GTCAATCCTGTTCTAGTGACCATGCCAAAAACGGGGGGGTTTCTGGAAAGGAGGATGCAAGGAGCTCAACTGCAGGTTCAATGATGGTGAGTAAGATGGT TGGTGTTTCTCTGCGGCATCGTAAATCAGGCAATGGCTTTCCAGGACAGGCTATGTCCGGTGTCCAAAAGGAAACTGGGTCAAGCAGGAATTCTTCTTTG CACAAAAATTTAGGTTCAGAGAAATTGTCACAGTCCAGTTTGACATGTGAGAAGGCACTGGATGTTCCCGTTGCTGAGGGGAATGGTCATAAATTTATTG TTAAGATCCCCAACAGAGGTCGCAGTCCTGCACAGAGTGCCAGTGGAGGGTCACTGGAAGACCCTTCTGTCATGAATAGCAGAGCTTCTTCTCCCGTGCT TTCAGAGAAGCATGACCATTTTGATCGTAACCTGAAGGAGAAGAATGATGCTTATCGAGCTAATATTACTTCTGATGTTAATACTGAATCGTGGCAAAGC AATGATTTCAAAGAGGTGTTGACTGGTTCTGATGAGGGAGATGGGTCCCCTACTACTGTTCCTGATGAAGAGCACTGTCGGACTGGTGATGATTCTAGAA AATTAGCTGAAGCCTCAAAAGCTACTTCCTCATCATCTGCAAATGAAGAAAAAATGGTGAAATTGCATGATGCATCTTTCAGCTCCATGAATGCTTTGAT TGAAAGCTGTGCAAAATACTCTGAAGCTAATGCATCGATGTCTGTTGGCGATGATATTGGCATGAACCTGCTTGCTAGTGTAGCTGCTGGGGAGATGTCC AAGTCTGATACGGTTTCGCCAACTGATTCTCCACGGAGAAATACCCCTGTTGTTGAGAGCTCTTGTGCTGGCAGTGATGCGAGACCAAAGTCGTCACCAG GTGAGGACCCTGCTCAAGACAGAGGGCAGTTTGTTGATGTTGTTAATGATGAACATGAGAAGCGGGCAATTGTTCTTGGTACTTCACTAGCTGCTAAGAA CTTCGATGGTAAAACCATTTTGATTTCACAAGAAAAACTCAAAGGGCAGCTCAATGGACAATTCAATTCTTCTAATATGGATGTGCAGCAAACTTCTGAA TGTCCAGAAAGCAATTTGAAATCAGAGGAAGTGTTAGTATCCGTTTCAGTGGCTGTGCCCTCTCCAAGCACTGTAGAGAAAGCATCATTTGATGGAGGGA AAGAACCACAGGAGGATAAGGGGGTTGGCAGATCGAATGCAGATGGTGTATCTGCAGCTAAAGAAAAGTTGCACCGCTCTATCACAACAGAAGATAAGGT CAATATTACCAGAATGGAAGTTGGGACTGAAGTCAATAACATATCTTCATCATACCCATCCATCAAGCTTAATGGTGAGAACAATAAAAATATGAATGAA AACGATGAGGAGAAACCACCTACCAAAATGCATCCTGAGTTGACAGAAGGATCTGATGGGGAAGTGCTCCAGCCTTATGGATCCAGCAAGGATATGGTCT CTGAAAACATGGATGAGGTTAAGGCTGAAAGAGCTGGTGAAGCTACTGAAAAAAGAAATAGTGAACATGAAAGTAATACAGGCCCAGATGCTACCAATAA CAAAGGTGAGTGCGTGGATGACAGACAAGAAGATAAGCAGGTTAATGAGAAACATGGTGATGGTTCAGCGCTTCACGAGTCCTCGCCTGCAATCGGTCAA AAACCAGAACAAGAAGCGAGATCAAGGGGATCCAAGTTGACTGGCACTGAAGGTGATGAAACAGAGGAATGTACATCTGCTGATGCTTCTTCTTTAACTG CTACTGGGGGGTTGGATCAGGAAACAAAAGTTGTATTTGATCTGAATGAAGGCTTCAATGCTGATGATGGGAAATATGAGGAGCTGAATAACTTGAGGGC ACCTGGATGCTCTGCTCCTGTTCAACTAATTAACCCCTTGCCTTTGGCAGTTTCTTCTGTGTCCAATGGTCTTCCTGCTTCAATTACTGTGGCTTCTGCC GCAAAGGGGCCCTTTGTTCCACCAGAGGATTTACTAAAGAATAGAGGGGAGCTTGGTTGGAAGGGATCAGCAGCCACAAGTGCATTTCGGCCAGCTGAAC CTAGAAAAGCTTTGGAGATTTCATTAGGTACAGCTAGTATTTTTCTCACTGATGCAACTACTTCCAAGCCCAGTCGCCCGCCTTTGGATATTGACTTAAA TGTGGCTGATGAAAGAGTTCTTGAGGATTTGGCTTCTCGAAGTTCTTCTCGGGGTGCTGTTTCTGTAGCTGATCTTGTGAATAATCATGATCGAGTGCAG GATGCACCGATGGCTTCAGCATCAGTTCGTAGCTCTGGGGGACTTGACCTTGATTTGAATAGAGTGGATGAGCCTAATGATATGGGTAATCACTTAACAA GCATGGACTGTAGGCTGGAAGCTCAACTTCATCATGTCAAACCATCATCTGGTGTTCTTAATGGAGATGTGAATGCTTGCAGAGACTTTGATTTAAATGA TGGGCCTCTAGCTGAAGAGATGAGTGCTGAACCATCACCATTTAGCCAGCTCACCAGGAGCAGTGTGCCATCCCAACCATCTGTTTCTGGTATTCGGATA AACAGTACAGAAACGGGAAACTTCCCCTCTTGGTTTCCTCAAGGGAATCCTTATCCAGCTGTCACAATTCAGTCAATCTTACCTGATAGAGGAGAGCCGC CCTTTTCAATAGTTGCACCTGGTGGGCCTCAGAGGATGTTGGCTCCGCCTACTGGCAGCAGCTCATTTAGTTCTGATATCTATAGAGGGCCAGTGTTGTC ATCTTCCCCAGCAATGTCGCTTCCATCTATGCCTTTTCAGTATCCTGTCTTTCCTTTTGGAACAAATTTTCCTTTATCCCCAGCCACATTTTCAGGTGGT TCAACAGCATACATGGATTCATCTTCTGGAGGGAGGCTTTGCTTTCCTGCAACACCCTCTCAAGTAATAGGACCTGCAACCGCGATCCATTCGCATTATC CAAGACCTTCCTATGTTGTTAACTTCCCAGATGGTAACAGTAATGGTGGAGCTGAGAGCAGTAGGAAATGGGGAAGGCAGGGTCTAGACCTCAATGCAGG GCCTCTAGGCCCAGATGCAGAAGGGAGAGATGAGACATCTTCTCTTGTATCAAGGCAACTTTCTGTTGCCAGTTCACAGGCCCTTACTGAGGAGCAATCA AGGATGTATCATTTGGCTACTGGAAGTCTCTTGAAGAGAAAAGAGCCGGAGGGTGGTTGGGAAGGTTATAAGTAA
AA sequence Show only first row Show all	>Potri.012G077500.2 pacid=42783954 polypeptide=Potri.012G077500.2.p locus=Potri.012G077500 ID=Potri.012G077500.2.v4.1 annot-version=v4.1 MLHGREGEERKTDHRHMWTGPSRGNSVVAGDDVVSDSFFKDGRKISVGDCALFKPPQDSPPFIGIIRWLTTSKENKLKLGVNWLYRRSEVKLGKAILLEA APNEIFYSFHKDEIPAASLLHPCKVAFLPKGVELPSGICSFVCRRVYDITNKCLWWLTDQDYINERQEEVDHLLNKTRLEMHATVQPGGRSPKPVNGPTS TSQLKPGSDSVQNSVSSFPSQGKGKKRERIDQGSEPVKRERFTKMDDGDSGHSRPESMWKSEISKFTDRGGLVDSEGVEKLVHLMMPERNDKKIDLVGRS ILAGVVAATDKFDCLNRFVQLRGLPVFDEWLQEVHKGKNGDGSSPKDGDKSAEEFLLVLLWALDKLPVNLHALQMCNIGKSVNNLRTHKNLEIQKKARSL VDTWKKRVEAEMDANTKSGSNQGVSWTARSRLPEISHGGNRQFGVSSEVAMKSTVVQLSASKTGSVKVVQGETVARSASTSPGPIRSTASPGSAGNNSKE AHPRNTGASGASDPSVVVARDEKSSSSSQSHNNSQSCSSDHAKNGGVSGKEDARSSTAGSMMVSKMVGVSLRHRKSGNGFPGQAMSGVQKETGSSRNSSL HKNLGSEKLSQSSLTCEKALDVPVAEGNGHKFIVKIPNRGRSPAQSASGGSLEDPSVMNSRASSPVLSEKHDHFDRNLKEKNDAYRANITSDVNTESWQS NDFKEVLTGSDEGDGSPTTVPDEEHCRTGDDSRKLAEASKATSSSSANEEKMVKLHDASFSSMNALIESCAKYSEANASMSVGDDIGMNLLASVAAGEMS KSDTVSPTDSPRRNTPVVESSCAGSDARPKSSPGEDPAQDRGQFVDVVNDEHEKRAIVLGTSLAAKNFDGKTILISQEKLKGQLNGQFNSSNMDVQQTSE CPESNLKSEEVLVSVSVAVPSPSTVEKASFDGGKEPQEDKGVGRSNADGVSAAKEKLHRSITTEDKVNITRMEVGTEVNNISSSYPSIKLNGENNKNMNE NDEEKPPTKMHPELTEGSDGEVLQPYGSSKDMVSENMDEVKAERAGEATEKRNSEHESNTGPDATNNKGECVDDRQEDKQVNEKHGDGSALHESSPAIGQ KPEQEARSRGSKLTGTEGDETEECTSADASSLTATGGLDQETKVVFDLNEGFNADDGKYEELNNLRAPGCSAPVQLINPLPLAVSSVSNGLPASITVASA AKGPFVPPEDLLKNRGELGWKGSAATSAFRPAEPRKALEISLGTASIFLTDATTSKPSRPPLDIDLNVADERVLEDLASRSSSRGAVSVADLVNNHDRVQ DAPMASASVRSSGGLDLDLNRVDEPNDMGNHLTSMDCRLEAQLHHVKPSSGVLNGDVNACRDFDLNDGPLAEEMSAEPSPFSQLTRSSVPSQPSVSGIRI NSTETGNFPSWFPQGNPYPAVTIQSILPDRGEPPFSIVAPGGPQRMLAPPTGSSSFSSDIYRGPVLSSSPAMSLPSMPFQYPVFPFGTNFPLSPATFSGG STAYMDSSSGGRLCFPATPSQVIGPATAIHSHYPRPSYVVNFPDGNSNGGAESSRKWGRQGLDLNAGPLGPDAEGRDETSSLVSRQLSVASSQALTEEQS RMYHLATGSLLKRKEPEGGWEGYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	1.41	0.9013
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	2.23	0.9148
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	3.00	0.8719
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	4.89	0.8922
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	5.83	0.8386
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	5.91	0.8766
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	7.54	0.8233
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	8.48	0.8677
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	11.83	0.8617
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	11.83	0.8864

Compare expression of checked genes

Potri.012G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.