Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 1343 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 1296 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G11560 100 / 4e-21 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 70 / 4e-12 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 65 / 2e-10 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 65 / 2e-10 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 65 / 6e-10 Transcription elongation factor (TFIIS) family protein (.1) AT5G09850 48 / 3e-05 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 47 / 7e-05 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072900 [exp] 2548 / 0 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 2470 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 2082 / 0 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G104300 [exp] 101 / 2e-21 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 97 / 5e-20 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 76 / 2e-13 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.005G241400 [exp] 67 / 1e-10 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.003G127300 [exp] 59 / 3e-09 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G226000 [exp] 44 / 0.0004 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033410 [exp] 1430 / 0 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 939 / 0 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 97 / 5e-20 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 96 / 8e-20 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10009128 [exp] 82 / 4e-15 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 81 / 8e-15 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 80 / 2e-14 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 77 / 1e-13 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10020020 [exp] 45 / 0.0002 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 45 / 0.0003 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.012G077700.1 pacid=42783154 polypeptide=Potri.012G077700.1.p locus=Potri.012G077700 ID=Potri.012G077700.1.v4.1 annot-version=v4.1 ATGCTGCATGGGCGGGAAGTTGAGGAGGAGAGGAAAAAGGATCGTATTCGGCACATGTTGACTGCTCCCATACGTGTTAACAACAATTCAGTTGTAGCTG CTCCCGATTTTGTTTCTTCTCCTTCTCCTTCTTCTTTGTCATCTCCAGCCGATTCTTTTTACAAGGATGGACGCAAGATCAGTGTTGGAGACTGTGCTTT GTTCAAACCGCCTCAGGATTCCCCTCCTTTCATAGGAATAATTCAAAGACTGACTACTGGTAAAGAGAACAAGTTAAAGTTAGGTGTGAATTGGCTTTAT CGGCCTGCTGACATAAAGCTTGGCAAATGCATCCTTTTGGAAGCTGCGCCAAACGAAGTATTCTTTTCATTTCACAAGGATGAAATTCCTGCTGCATCAC TACTCCATCCGTGTAAAGTTGCCTTCCTTCCAAAAGGTGTTGAACTTCCATCAGGGATTTGCTCATTTGTTTGCCGGCGAGTTTATGACACTACAAACAA GTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACGGCAAGAAGTAGTGGATCAGCTATTATCTAAGACACGCTTAGAAATGCATGCAACAATT CAGCCTGGTGGATGTTCTCCTAAGACAATGAATGGTCCAACTTCAACACCACAGCTGAAACCTGGTTCTGATAGCGTACAGAATAATGCCCCCTCCTTCC CTTCGCAATCTAAGGGAAAGAAAAGGGATCGTGGAGATCAGGGGTTTGAGCCCATTAAACGAGAACGTTTTATGAAAATGGATGATGGGGATTCTGTTCA TAGACCAGAAAGCATTTGGAAATCTGAGATTGCTAAATTTACAGAAAAGGGTGGACTTGTGGATTCTGAAGGGGTTGAGAAATTAGTGCATCTCATGCTG CCAGAGAGGAACGAGAGAAAAGTAGATTTGGTTGGCCGGTCATTACTGGCTGGTGCGATAGCTGCCACAGATAAGTTTGATTGCCTAAATCGGTTTGTGC AGCTAAGGGGCTTGCCTGTATTTGATGAATGGCTGCAGGAGGTCCATAAAGGGAAGATTGGTGATGGTAATAGCCACAAGGATAGTGATAAATCTGTTGA GGAATTTCTACTAGTTTTGCTTCGTGCTTTGGATAAACTCCCTATAAATCTTCATGCTCTGCAAATGTGTAATATTGGCAAATCTGTGAATCATTTGCGG ACGCATAAGAACTTGGAAATACAAAAGAAAGCAAGGAGCTTGGTTGACACATGGAAGAAACGTGTTGAGGCTGAAATGGATGCAAATACAAAGTCTGGCT CTAACCATGGTGTCTCCTGGACTGCCAGATCACGTCTTCCTGAAGTTTCACATGGTGGGAACAGACCTGGTGTATCCTCTGAGGTTGCAATGAAGAGCTC AGTTGTGCAACTCTCTGCTTCCAAAAGTGGTCCAGTCAAGCTTGTCCAAGGGGAGACTGTGACCAAGTCTGGATCATCTCCAGGGCCCATAAAACCAGCA GCGTCACCTAATGCAGCTGGTAATAATTTGAAAGATGGACAGCCCAGAAATACTGGTGTCAGTGGTGCGATGGATCTACCTGTATCAGCAGCTAGGGACG AGAAAAGCAGCAGTTCTAGTCAGTCCCACAACAACAGTCAATCTTGTTCTAGCGAACATGCCAAAACTGTGGGATTGTCAGGAAAGGACGATGCAAGGAG CTCCACTGCTGTTTCAATGGCAGCAAATAAGATCATTGGTGGCTCTTTGCGGCATCGTAAACCAGTTAATGGCTTTTCAGGCCCAGCTTTATCTGGGGCC CAAAGAGATAGTGGGTCAAGTAGAAGTTCTCCCTTGCACAAAAATCCAGGTTCAGAGAAATTGCAACAGTCTAGTTTGGCTTGTGAGAAGGTACTTGATG CTCCCATGGCTGAGGGGAATAATCATAAAATTATTGTTAAAATTCCCAATAGAGGTCGCAGTCCCGCACAAAGTTCCAGTGGAGGAACTTTTGAAGATGC TTTAGTCATGAGTAGCAGAGCTTCTTCTCCTGTGGTTTCAGAGAGGCATGAACAGTTTGATCACAATTTGAAGGAAAAAAATGATCCTTATCGAGCTAAT ATCACATCAAATGTGAAGACTGAGTCATGGCAAAGCAATGATTTCAAGGAGGTGCTGACTGGGTCAGATGAGAGAGATGGGTTGCCTGCCAATGTTCCCG ATAAAGAGCATGGTCAGACGGGTGATGATGCAAGGAAGTTAGGTGAAGTCTCAAAAACTACACCCTCTTTGACTGTGTTTGAACTTAAATCGGAGAAGTC ATATGATGCTTCTTTCAGCTCCATGAATGCCCTGATTGAAAGTTGTGCGAAGTATTCTGAAGGAAATGCAGCCATGACAGTTGGTGATGATGTTGGTATG AATCTACTTGCTAGTGTGGCTGCTGGGGAGATGTCCAAGTCTGATGTGGTTTCGCCAACAAATTCTCCTTGTATAAGCATGCCCATTGAGCGCTCTTGGG CGCCAAGTGGTTTGAGAGGAAAATCATCTCCGTGTGACGATCCTGCTCAAAGCCAGGGTAAGTCTGCTGATGGTGTTGATGATGACGATGAGAAGCGGGT TACTGTTGTTGGCACTCCTCCATCCAAGAACACGGAGGCTAAAACCGTTCTGTTTTCACAAGAAAAACACGCAGGGGAGCTCAATGGACCTTCCAATTCT TCCAATGTGGATGCTGCTGAACCATGCATGGAAAGCAATGTGAAATCTGATGAAACATTAGCAGCTCCCGTGTCCTCTGCTAGCATGGCTGTGAGAACAT CAAATTGTGGGGGCAAAGAACCATGGGAGAAAGAGGGGGATGGCATATCTGATGACAAAAATAAGTTGCTGCATAGTTCTGTCTTAACTGAGGTGAATTA TACAGGAGTGCAAGTTGGGACTGAAGCAATCGAAGGATCATCATCAAACCATCATGTAGAGGTTGATGGCGAGAACAATAAAAACATGAATAAAGAGCTG AATGTTTCTATTCATGCAGATCCAAAACCACCTGCTATGATGCAGTCTGATTTTTCAAAAGGAACCAATGATGAAATGCCCCAACCTTCTAGTTCTGGTA AGGATATGATTTCTGAAAACATGCATGATGTGAAGGCTGGTGAAACAGATGGCAGAAGTCATTCTACCGAGAAAAAGAAAATCAAACATGAAAGCAATAC AGCCCCAGCTGCAACTGATCATGAAAGTGAGTGCAAGGTGGAGAGCCTGGGAGGCAATCAGGGCAATAAGCAATGTAGTGCCAGACCAGCTGCTCACAAG GCAGAACCCACACTTGTTCAGGCATCAGAACAAGTAGTGAGGTCAACAGGGTCAAAGTTGGCTGGCTCAGGAGCTGATGAAACTGAGGAATGTACATCTG CCGCTGCTGATGCTTCTTCTTTATCTGCTACAGGGGGATTGGATCTGGAAACAAAAGTTGAATTTGATCTGAATGAAGGCTTTATTGCTGATGATGGGAA ATATGAGGAACCAAATAACTTGAGAGAACCTGCATGTTCTGCTGCTATTCAACTAATTAGCCCTTTTCCATTGCCAGTTTCTTCTGTGTCTAGTGGGCTT CCCGCTTCCATTACAGTAGCTGCTGCTGCAAAAGGGCCCTTTGTTCCACCAGAGGATTTACTTAAGAGTAGAGGGGAGCTTGGTTGGAAGGGATCAGCAG CCACTAGTGCATTTCGTCCAGCTGAACCTAGAAAAGCTTTGGAGATTTCATTAGGTACAGCTAACATCTCACTCCCTGATGAAATGGTTTCCAAGCCTGG TCGGCCCTTGTTGGATATCGACTTGAATGTACCTGATGAAAGAATCCTTGAGGATTTGGCTTTTCGAATTTCTGCTCAGGATACTGTTTCTGTCTCCGAC CTTGCAAAAAATAGTGATTGTGCACGTGATACACTGATGGGTTCATTATCTGGTCGGAGCTTTGGGGGATTTGATCTTGATTTGAATAGAGCAGATGAGG CTAGTGATATGGGTAATCACCTGACAAGCATTGGTCGGAGGCTGGATGCCCCACTACTTCCTGCCAAATTGTCATCAGGTGGTCTTCTAAATGGAGAGGT CAGCAGTCGCAGGGACTTTGATTTAAATGATGGCCCTCTTGTTGATGAGGTGAGTGCCGAACCATCACCACATAGCCAACATGCCCGAAACATTGTGCCA TCCCAGCCATCTATTTCTAGCCTTAGGATCAACAGTTCCGAAACAGGAAGCTTGCCCTCCTGGTTTCCTCAAGGGAATCCATATCCTGCTGCCACAATCC AATCTATCTTGCATGATAGAAGAGAGCAGCCTTTCCCTATAGTTGCAACTGGTGGGCCTCGGAGGATGTTGGCTCCCTCTACTGGCAACAACCCATTTAA TTCTGATATCTACAGGGGAGCAGTGTTGTCATCTTCTCCAGCAGTGCCGTTTCCATCTACTCCATTTCAGTATCCTGTCTTTCCTTTTGGGAACAGCTTC CCTCTGCCCTCTGCAACTTTTTCAGGTGGTTCAGCATCGTATGTGGATTCATCATCTGGTGGGAGGCTTTGCTTTCCCACAGTACCCTCTCAAGTATTAG CAGCACCGGTAGGTGCAGTCTCATCTCATTATCCAAGGCCTTCTTATGCTGTTAACTTCCCAGACATTAACAATAATGGTGCTGCAGAGAGCAGTAGGAA ATGGGTAAGGCAGGGTCTCGACCTCAATGCAGGGCCTCTAGGCCCAGACATTGAAGGTAGAGTTGAGACTTCAGCTCTTGCATCAAGGCAACTGTCAGTT GCCAGTTCACCGGCCCTTGCAGAGGAGCAATCGAGGATGTATCAAGTGACTGGCGGAGGTGCTCTGAAGAGGAAGGAGCCAGAGGGTGAATGGGAAGGTT ATAAGCAATCCTCATGGCAGTAG
AA sequence Show only first row Show all	>Potri.012G077700.1 pacid=42783154 polypeptide=Potri.012G077700.1.p locus=Potri.012G077700 ID=Potri.012G077700.1.v4.1 annot-version=v4.1 MLHGREVEEERKKDRIRHMLTAPIRVNNNSVVAAPDFVSSPSPSSLSSPADSFYKDGRKISVGDCALFKPPQDSPPFIGIIQRLTTGKENKLKLGVNWLY RPADIKLGKCILLEAAPNEVFFSFHKDEIPAASLLHPCKVAFLPKGVELPSGICSFVCRRVYDTTNKCLWWLTDQDYINERQEVVDQLLSKTRLEMHATI QPGGCSPKTMNGPTSTPQLKPGSDSVQNNAPSFPSQSKGKKRDRGDQGFEPIKRERFMKMDDGDSVHRPESIWKSEIAKFTEKGGLVDSEGVEKLVHLML PERNERKVDLVGRSLLAGAIAATDKFDCLNRFVQLRGLPVFDEWLQEVHKGKIGDGNSHKDSDKSVEEFLLVLLRALDKLPINLHALQMCNIGKSVNHLR THKNLEIQKKARSLVDTWKKRVEAEMDANTKSGSNHGVSWTARSRLPEVSHGGNRPGVSSEVAMKSSVVQLSASKSGPVKLVQGETVTKSGSSPGPIKPA ASPNAAGNNLKDGQPRNTGVSGAMDLPVSAARDEKSSSSSQSHNNSQSCSSEHAKTVGLSGKDDARSSTAVSMAANKIIGGSLRHRKPVNGFSGPALSGA QRDSGSSRSSPLHKNPGSEKLQQSSLACEKVLDAPMAEGNNHKIIVKIPNRGRSPAQSSSGGTFEDALVMSSRASSPVVSERHEQFDHNLKEKNDPYRAN ITSNVKTESWQSNDFKEVLTGSDERDGLPANVPDKEHGQTGDDARKLGEVSKTTPSLTVFELKSEKSYDASFSSMNALIESCAKYSEGNAAMTVGDDVGM NLLASVAAGEMSKSDVVSPTNSPCISMPIERSWAPSGLRGKSSPCDDPAQSQGKSADGVDDDDEKRVTVVGTPPSKNTEAKTVLFSQEKHAGELNGPSNS SNVDAAEPCMESNVKSDETLAAPVSSASMAVRTSNCGGKEPWEKEGDGISDDKNKLLHSSVLTEVNYTGVQVGTEAIEGSSSNHHVEVDGENNKNMNKEL NVSIHADPKPPAMMQSDFSKGTNDEMPQPSSSGKDMISENMHDVKAGETDGRSHSTEKKKIKHESNTAPAATDHESECKVESLGGNQGNKQCSARPAAHK AEPTLVQASEQVVRSTGSKLAGSGADETEECTSAAADASSLSATGGLDLETKVEFDLNEGFIADDGKYEEPNNLREPACSAAIQLISPFPLPVSSVSSGL PASITVAAAAKGPFVPPEDLLKSRGELGWKGSAATSAFRPAEPRKALEISLGTANISLPDEMVSKPGRPLLDIDLNVPDERILEDLAFRISAQDTVSVSD LAKNSDCARDTLMGSLSGRSFGGFDLDLNRADEASDMGNHLTSIGRRLDAPLLPAKLSSGGLLNGEVSSRRDFDLNDGPLVDEVSAEPSPHSQHARNIVP SQPSISSLRINSSETGSLPSWFPQGNPYPAATIQSILHDRREQPFPIVATGGPRRMLAPSTGNNPFNSDIYRGAVLSSSPAVPFPSTPFQYPVFPFGNSF PLPSATFSGGSASYVDSSSGGRLCFPTVPSQVLAAPVGAVSSHYPRPSYAVNFPDINNNGAAESSRKWVRQGLDLNAGPLGPDIEGRVETSALASRQLSV ASSPALAEEQSRMYQVTGGGALKRKEPEGEWEGYKQSSWQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	1.41	0.9384
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.001G157300 [exp]	2.00	0.9342
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	2.82	0.9079
AT3G45830			unknown protein		Potri.001G233800 [exp]	3.00	0.9173
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	5.74	0.8932
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	5.91	0.8965
AT1G06230		GTE4	global transcription factor gr...		Potri.013G118900 [exp]	8.36	0.9030
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	8.48	0.8964
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	10.72	0.8718
AT3G45830			unknown protein		Potri.009G026100 [exp]	10.81	0.8944

Compare expression of checked genes

Potri.012G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.