Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40200 845 / 0 DEGP9 DegP protease 9 (.1) AT2G47940 514 / 2e-177 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT5G36950 449 / 4e-152 DEGP10 DegP protease 10 (.1) AT1G65630 409 / 4e-137 DEGP3 DegP protease 3 (.1) AT1G65640 332 / 2e-108 DEGP4 DegP protease 4 (.1) AT3G16540 318 / 6e-102 DEGP11 DegP protease 11 (.1) AT5G40560 305 / 9e-99 DEGP13 DegP protease 13 (.1) AT3G16550 305 / 2e-97 DEGP12 DEGP protease 12 (.1) AT1G51150 143 / 3e-39 DEGP6 DegP protease 6 (.1) AT5G54745 118 / 2e-30 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073100 [exp] 991 / 0 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.014G135200 [exp] 538 / 0 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 536 / 0 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.008G079900 [exp] 456 / 7e-155 AT5G36950 857 / 0.0 DegP protease 10 (.1) Potri.001G348800 [exp] 66 / 4e-11 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.013G018300 [exp] 66 / 4e-11 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.004G129200 [exp] 53 / 5e-07 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.007G067850 [exp] 43 / 6e-05 AT5G40200 45 / 5e-06 DegP protease 9 (.1) Potri.011G083300 [exp] 42 / 0.0008 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014524 [exp] 809 / 0 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 807 / 0 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10024525 [exp] 442 / 7e-150 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10005931 [exp] 309 / 3e-99 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008726 [exp] 287 / 5e-92 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10008727 [exp] 139 / 1e-37 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10008781 [exp] 73 / 2e-13 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10037815 [exp] 64 / 1e-10 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10040905 [exp] 59 / 2e-10 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10022234 [exp] 57 / 3e-08 AT3G27925 623 / 0.0 DegP protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.012G077900.2 pacid=42783277 polypeptide=Potri.012G077900.2.p locus=Potri.012G077900 ID=Potri.012G077900.2.v4.1 annot-version=v4.1 ATGGCCAGTGACGGAAAACGGAAGAAACGAGGCCGCAAATCTAAAACCCAGACAACCCTAGACCCCACAACTTCCACCATAAACGATGAGGTTTTCTCCG TTAACAATGTCGAAACCGTGAATTCTACCACCCCAACCAGCGCCAAAAAACACGAAAACCGCCGCGGCCGTCCTAAGAAACGATCCAAGCACTCACCAGA GAAGCCCGAGAAACCCCCGCCATTAATTAATGGAGAAATTGGGGTTGCGCCGCCTGTGGAGGGCGTGACCAGGGTGGTTCCGGCGATGGATGCGGTGGTG AAAGTGTTTTGTGTACACACGGAGCCGAATTTATCGCTTCCGTGGCAGAGGAAGAGGCAGTATAGTTCCAGTAGTAGTGGTTTTGTTATTGGTGGAAGGA GGGTTTTGACTAATGCGCATTCTGTGGAGCATTATACACAGGTTAAGCTTAAGAAGCGTGGCTCTGATACTAAGTATTTGGCTACTGTTCTTGCTATTGG AACTGAATGTGATATTGCCTTGCTAACAGTCAATGATGATGAGTTCTGGGAAGGTGTGTCACCTGTAGAGTTTGGAGAATTGCCTTCACTTCAAGATGCT GTAACTGTCGTTGGTTACCCAATTGGAGGGGACACAATTTCTGTGACAAGTGGTGTTGTATCTCGGATAGAGATCCTATCCTACGCCCATGGATCAACAG AGCTTCTGGGTTTGCAAATAGATGCTGCTATAAACTCAGGAAATTCTGGTGGTCCTGCCTTTAATGATAAAGGTGAATGTGTGGGCATTGCGTTTCAGTC CCTTAAACATGAAGATGCTGAGAATATAGGGTATGTTATACCAACTCCGGTCATCAAGCACTTCATCCAAGATTATGAGAAGAATGGAGCATACACAGGA TTTCCGTTTCTTGGGATTGAATGGCAGAAAATGGAAAATCCAGATATGCGTGTGGCAATGGGTATGAAATCTGATCAGAAGGGTGTTCGTATCAGAAGAA TTGACCCCACTGCTCCAGAATCTGAAGTCTTGCAGCCATCTGACATCATTCTCAGCTTTGATGGGGTAGATATTGCTAATGATGGAACAGTTCCCTTTCG GCATGGTGAGCGCATTGGTTTCAGCTATCTTATCTCCCAAAAGTATACTGGGGATAATGCTGTGATCAAAGTTCTTCGGAATTCTAAGACTCTAGAATTT GACATCAAACTCTCAACTCACAGAAGGCTAATTCCTCCGCATGTCAAGGGAAAACCTCCATCCTATTATATCATTGCAGGATTTGTATTCACGACAGTTT CTGTTCCTTATCTCCGTTCTGAGTATGGCAAGGAATATGAATTTGAAGCTCCTGTCAAGCTTCTGGACAAACTTTTGCATTCAATGCCACAATCCCCGGA TGAGCAGATAGTTGTGGTTTCTCAGGTGCTTGTAGCTGACATTAATATTGGGTATGAGGACATTGTTAACACCCAGGTTGTTGCTTTCAATGGTAAGCCA GTGAAGAATTTGAAGAGCTTGGCCAACATGGTTGAGAATTTTGATGATGAGTTTCTGAAATTTGATCTGGAATATGACCAGATAGTTGTTCTCCGGACAA AGACTGCCAAGGAAGCTACTGTAGATATTCTTACCACTCATGGCATACCTTCTGCAATTTCTGATGATCTTAAGCCATGA
AA sequence Show only first row Show all	>Potri.012G077900.2 pacid=42783277 polypeptide=Potri.012G077900.2.p locus=Potri.012G077900 ID=Potri.012G077900.2.v4.1 annot-version=v4.1 MASDGKRKKRGRKSKTQTTLDPTTSTINDEVFSVNNVETVNSTTPTSAKKHENRRGRPKKRSKHSPEKPEKPPPLINGEIGVAPPVEGVTRVVPAMDAVV KVFCVHTEPNLSLPWQRKRQYSSSSSGFVIGGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIALLTVNDDEFWEGVSPVEFGELPSLQDA VTVVGYPIGGDTISVTSGVVSRIEILSYAHGSTELLGLQIDAAINSGNSGGPAFNDKGECVGIAFQSLKHEDAENIGYVIPTPVIKHFIQDYEKNGAYTG FPFLGIEWQKMENPDMRVAMGMKSDQKGVRIRRIDPTAPESEVLQPSDIILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDNAVIKVLRNSKTLEF DIKLSTHRRLIPPHVKGKPPSYYIIAGFVFTTVSVPYLRSEYGKEYEFEAPVKLLDKLLHSMPQSPDEQIVVVSQVLVADINIGYEDIVNTQVVAFNGKP VKNLKSLANMVENFDDEFLKFDLEYDQIVVLRTKTAKEATVDILTTHGIPSAISDDLKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	0	1
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.013G032400 [exp]	1.00	0.8836
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	2.82	0.8821
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Potri.017G051500 [exp]	4.47	0.8703
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	5.47	0.8798
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.008G222700 [exp]	7.07	0.8069
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.001G173500 [exp]	11.53	0.8522
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	14.00	0.8714
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	14.07	0.8192
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	15.87	0.8364
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	18.33	0.8591

Compare expression of checked genes

Potri.012G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.