Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48030 156 / 2e-48 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073300 [exp] 177 / 7e-60 AT3G48030 156 / 4e-48 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002358 [exp] 142 / 4e-46 AT3G48030 144 / 1e-43 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042137 [exp] 145 / 4e-42 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04588 [poplar] [flax] HIG_1_N Hypoxia induced protein conserved region
Representative CDS sequence Show only first row Show all	>Potri.012G078000.2 pacid=42783902 polypeptide=Potri.012G078000.2.p locus=Potri.012G078000 ID=Potri.012G078000.2.v4.1 annot-version=v4.1 ATGGAGAAGATGGGTACGGCGGAACCCAACTTTGAACAGCTATTCGAGGAGAAGAAGCGCGTCCGGAACCCCCTCGTTCCCGTCGGAGCACTTATGACGG CAGGAGTTCTCACGGCTGGATTAATCAGTTTCAGACGAGGCAATTCTCAGTTGGGGCAGGTGTTAATGAGAGCTCGAGTGGTTGTCCAAGGGGCTACTGT GGCCCTTATGGTTGGCACTGCTTTCTACTATGGGGATAACCCATGGAAAAAACCAAGTTAG
AA sequence Show only first row Show all	>Potri.012G078000.2 pacid=42783902 polypeptide=Potri.012G078000.2.p locus=Potri.012G078000 ID=Potri.012G078000.2.v4.1 annot-version=v4.1 MEKMGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMVGTAFYYGDNPWKKPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48030			hypoxia-responsive family prot...		Potri.012G078000 [exp]	0	1
AT5G04830			Nuclear transport factor 2 (NT...		Potri.010G241700 [exp]	6.70	0.8905
AT5G18110		NCBP	novel cap-binding protein (.1)		Potri.013G057000 [exp]	9.48	0.8790
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.016G113500 [exp]	11.31	0.8841	HPT3.1
AT3G54826			Zim17-type zinc finger protein...		Potri.008G037300 [exp]	12.64	0.8810
AT5G43260			chaperone protein dnaJ-related...		Potri.003G171800 [exp]	16.58	0.8940
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.011G168200 [exp]	19.77	0.8596	UBC.8
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	21.95	0.8906
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.014G076400 [exp]	26.53	0.8680
AT1G22750			unknown protein		Potri.002G062600 [exp]	28.58	0.8583
AT1G71480			Nuclear transport factor 2 (NT...		Potri.019G074800 [exp]	33.88	0.8753

Compare expression of checked genes

Potri.012G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.