Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 201 / 2e-56 Leucine-rich repeat protein kinase family protein (.1) AT5G41680 194 / 2e-56 Protein kinase superfamily protein (.1.2) AT5G05160 196 / 1e-54 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 194 / 2e-53 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G58300 193 / 3e-53 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 191 / 2e-52 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 189 / 2e-52 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 190 / 3e-52 RLK902 receptor-like kinase 902 (.1) AT2G36570 188 / 2e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 902 / 0 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 213 / 1e-60 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 211 / 5e-60 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G121700 [exp] 211 / 2e-59 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.006G117200 [exp] 208 / 2e-58 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 207 / 2e-58 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 202 / 8e-57 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 202 / 2e-56 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 198 / 4e-55 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002360 [exp] 643 / 0 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 632 / 0 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 506 / 1e-172 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 503 / 3e-171 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 495 / 2e-168 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10039483 [exp] 359 / 3e-116 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 213 / 2e-60 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 208 / 1e-58 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 206 / 9e-58 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 196 / 4e-57 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.012G078100.3 pacid=42783784 polypeptide=Potri.012G078100.3.p locus=Potri.012G078100 ID=Potri.012G078100.3.v4.1 annot-version=v4.1 ATGGATCGAATTCTGATCTGGGTTCTCCCCATTTTGATCTTTCTCGTTCTTCCAAAGTCCAATTCAGAAGATGAAAATGTCAAAACGGCACTGCTGCAAT TCATGGAGAAACTTTCAGCAGGACATGAGCAAAATGATCAGAATTGGGGTTGGGACATCAATTCGGATCCCTGCAATAGCACATGGAAAGGTGTGGACTG CTTGGGATCGCAAAATGTTAAGAGGATTGTTCTTAATAAGTTCAACTTAACAGGAATATTAGACGCTGCTTCTGTCTGCACAGCGAAGTCTCTTCTTGTC TTGAGCCTGAAAGAGAATAACATTTCTGGCTTCATACCTGACGAGATAGGAAATTGCAAACGTCTAAGCCACTTGTACGTAGGTGGGAACCGATTTACTG GTGATATTCCTGACACTATTTCCCAGTTAATTAACTTGAAAAGGCTTGATATATCCAACAACAACTTCTCTGGTGCGCTTCCTGATATGTCCCGAGTTTC AGGCCTGCTAACCTTCTTTGCTGAAAACAATCAGCTCGGTGGGGCAATACCGGATTTTGATTTCTCCTATATCAAGGAATTCAGTGTCGCCAACAATAAT TTCAGTGGTCCAATTCCTGATGTCAAAAGCAAGTTTGGGGCAGACAGCTTCACAGGTAACCCTGAATTATGTGGGACACTATTATCAAAAGCCTGCCCAC CATCCCCTCCACCGTCAAAAAAGGGATCGAAGCACTCATCAGCTGATCGGTTCCTTATCTTCTCAGGCTACATACTACTTGCCGTGGTTGTGCTGCTCTT ATTTGCTTTATATTTATTTAAGAAAAATAAATCTAAAGGAGAAACGGTTAAGGTAGTCAAGAAGGGGAAGGTAGCTACTGCGAGTAAAGAACCTAGTAGA ACTTCAAGTGAATCGAAGACTGGTGGTAATAGATCAGAGTATTCAATAACATCCGTTGAGGCCGGAACGACATCATCATCACTTGTGGTTCTTCCCAGTC CTGTGGTGAAGGATTTGAAATTTGATGACTTGCTTCGAGCTCCAGCTGAGTTGCTAGGTAGAGGAAAGCATGGAAGTTTATACAAGGTCATGCTCGATAA TGCTACGATCTTGGCATTGAAGAGGATCAAAGACTCGGGGATTTCTGCAGAAGACTTCAAGAGCAGAATTCAGAGGATAGACCAAGTGAAGCATCCCAGA GTATTGCCTCCAGTAGCCTTTTATTGCTCCAAGCAAGAGAAGCTCCTGGTATACGAGTATCAGCAGAATGGCAGTCTCTTCAAGCTTCTCCATGGATCCC AGAATGGTCAAGTATTTGACTGGGGAAGCAGACTCAATGTTGCAGCTAGTATTGCAGAGTCCTTAGCATACATGCACGAGCAGCTTCAAGAAGGTGGGAT TGCTCACGGGAACCTGAAATCCACCAACATTTTATTCAACAATAAAATGGAGCCCTGCATTAGTGAATATGGTCTTATTGTGGTTCAAGGCCAAGACCAG TCATTCCTTTCCCAGTCTGATAGCTTCAAAACCGATGCTCTGGGTAGAAACGTCGCATATAGCACCTTCAAGTTGGATGTTTATGGCTTTGGTGTGGTTC TTCTTGAGCTTTTGACAGGGAAACTAGTCCAAAACAATGGCTTTGATTTGGCAAGTTGGGTGCATTCAGTGGTTAGAGAAGAATGGACTGCTGAAGTTTT TGACAGGGCCTTGATCTTAGAAGGTGCTGGTGAAGAGAGGATGTTGAACCTGTTGCAGGTAGCATTGAAGTGCATAAATCCGTCTCCAAATGAGAGGCCA AGCACAAGCCAAATTTCAGCTATGATAAACACAATAAAAGAGGATGAAGAGAGATCCATTATTTCAGATCCATGA
AA sequence Show only first row Show all	>Potri.012G078100.3 pacid=42783784 polypeptide=Potri.012G078100.3.p locus=Potri.012G078100 ID=Potri.012G078100.3.v4.1 annot-version=v4.1 MDRILIWVLPILIFLVLPKSNSEDENVKTALLQFMEKLSAGHEQNDQNWGWDINSDPCNSTWKGVDCLGSQNVKRIVLNKFNLTGILDAASVCTAKSLLV LSLKENNISGFIPDEIGNCKRLSHLYVGGNRFTGDIPDTISQLINLKRLDISNNNFSGALPDMSRVSGLLTFFAENNQLGGAIPDFDFSYIKEFSVANNN FSGPIPDVKSKFGADSFTGNPELCGTLLSKACPPSPPPSKKGSKHSSADRFLIFSGYILLAVVVLLLFALYLFKKNKSKGETVKVVKKGKVATASKEPSR TSSESKTGGNRSEYSITSVEAGTTSSSLVVLPSPVVKDLKFDDLLRAPAELLGRGKHGSLYKVMLDNATILALKRIKDSGISAEDFKSRIQRIDQVKHPR VLPPVAFYCSKQEKLLVYEYQQNGSLFKLLHGSQNGQVFDWGSRLNVAASIAESLAYMHEQLQEGGIAHGNLKSTNILFNNKMEPCISEYGLIVVQGQDQ SFLSQSDSFKTDALGRNVAYSTFKLDVYGFGVVLLELLTGKLVQNNGFDLASWVHSVVREEWTAEVFDRALILEGAGEERMLNLLQVALKCINPSPNERP STSQISAMINTIKEDEERSIISDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26730			Leucine-rich repeat protein ki...		Potri.012G078100 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Potri.017G100900 [exp]	16.79	0.9554
AT5G61710			unknown protein		Potri.014G123500 [exp]	18.08	0.9537
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.002G047000 [exp]	23.66	0.9211	PtrAMT4-1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	27.78	0.9472
AT3G54040			PAR1 protein (.1)		Potri.009G039950 [exp]	34.81	0.9437
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G262001 [exp]	36.33	0.9401
AT4G18950			Integrin-linked protein kinase...		Potri.002G158950 [exp]	36.75	0.9434
AT1G52190			Major facilitator superfamily ...		Potri.012G087500 [exp]	38.79	0.8944
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G453100 [exp]	41.27	0.8959
AT3G20190			Leucine-rich repeat protein ki...		Potri.018G002600 [exp]	43.16	0.9395

Compare expression of checked genes

Potri.012G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.