Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62865 77 / 6e-18 unknown protein AT3G48020 69 / 3e-15 unknown protein AT5G14890 72 / 4e-15 NHL domain-containing protein (.1) AT3G01430 69 / 5e-15 unknown protein AT5G25240 45 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073800 [exp] 227 / 7e-77 AT5G62865 87 / 5e-22 unknown protein Potri.003G101300 [exp] 72 / 4e-16 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.001G132100 [exp] 66 / 1e-13 AT3G01430 122 / 7e-36 unknown protein Potri.006G259300 [exp] 58 / 4e-11 AT5G25240 47 / 2e-07 unknown protein Potri.018G114200 [exp] 54 / 2e-09 AT5G62865 57 / 1e-10 unknown protein Potri.006G190100 [exp] 51 / 2e-08 AT5G25240 64 / 3e-14 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033413 [exp] 125 / 1e-36 AT5G14890 96 / 3e-23 NHL domain-containing protein (.1) Lus10001942 [exp] 62 / 2e-12 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001933 [exp] 62 / 3e-12 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 62 / 4e-12 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10006290 [exp] 51 / 3e-08 AT5G25240 67 / 5e-15 unknown protein Lus10003184 [exp] 51 / 7e-08 AT1G04700 94 / 3e-21 PB1 domain-containing protein tyrosine kinase (.1) Lus10032160 [exp] 40 / 0.0004 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G078300.1 pacid=42784200 polypeptide=Potri.012G078300.1.p locus=Potri.012G078300 ID=Potri.012G078300.1.v4.1 annot-version=v4.1 ATGGCCTTTAGAGAGGTAGAACCGATCCCAGAAGAAACGACGTCGAATTCTCTCCTAACAAACACACGCTGCGGCTTCCTTTTTCCCTGCTTTTCTTCCC GACGATCCTCCAGCGTCGGATTATCCTTCTGGGAGCGAATCAAATCATCACCTTCATCAAACGGCGATGACCCTCATCCTAATCAATGGTGGTCCAAGGG GATGAGAGCGTTTAAGAAGATAAGAGAGTGGTCAGAAGTTGTTGCGGGTCCGAAGTGGAAAACTTTCATTCGGAGATTCAATAGAAATAAAAACAGCGGC AGCGGTAACGGAAGGCACCATGGGAAATTCCAGTACGATCCCTTTAGTTATTCGCTGAATTTCGATGAAGGACCAGGAGGACAGAATGGAAATCTCGATG ACTTGGATGATTATAATGGTTTTCGCGATTTCTCCTCCCGTTACGCCTCCGTTTCTGCTTCTGGTCGGCCGGTTGCTGTGGATGCGTCGAAGAGTAAAGA TGTGGCGGTTATGGTTTGA
AA sequence Show only first row Show all	>Potri.012G078300.1 pacid=42784200 polypeptide=Potri.012G078300.1.p locus=Potri.012G078300 ID=Potri.012G078300.1.v4.1 annot-version=v4.1 MAFREVEPIPEETTSNSLLTNTRCGFLFPCFSSRRSSSVGLSFWERIKSSPSSNGDDPHPNQWWSKGMRAFKKIREWSEVVAGPKWKTFIRRFNRNKNSG SGNGRHHGKFQYDPFSYSLNFDEGPGGQNGNLDDLDDYNGFRDFSSRYASVSASGRPVAVDASKSKDVAVMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62865			unknown protein		Potri.012G078300 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	2.64	0.9232	CYP51.2
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	8.00	0.8914
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Potri.003G159700 [exp]	8.06	0.8623	EXGT.2
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	8.12	0.9110	Pt-CLF.1
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	9.27	0.9196
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	10.67	0.9072
AT2G46890			Protein of unknown function (D...		Potri.014G109200 [exp]	10.95	0.8984
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	12.32	0.8888
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	13.41	0.8986
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.007G052600 [exp]	14.07	0.8979

Compare expression of checked genes

Potri.012G078300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.