Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60190 514 / 2e-174 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G10560 498 / 3e-168 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT1G29340 304 / 4e-93 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 286 / 1e-86 ARM repeat superfamily protein (.1) AT3G46510 264 / 1e-78 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 259 / 2e-77 ATPUB14 plant U-box 14 (.1) AT2G28830 234 / 6e-66 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 223 / 7e-64 PUB11 ARM repeat superfamily protein (.1) AT1G71020 216 / 4e-61 ARM repeat superfamily protein (.1.2) AT5G42340 197 / 4e-54 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074200 [exp] 1204 / 0 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 333 / 2e-104 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.011G071400 [exp] 324 / 8e-101 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.010G185900 [exp] 312 / 2e-96 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.006G107600 [exp] 310 / 6e-96 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.004G061800 [exp] 308 / 1e-94 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.016G134000 [exp] 303 / 4e-93 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 280 / 1e-84 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 275 / 3e-83 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029163 [exp] 622 / 0 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 611 / 0 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030862 [exp] 592 / 0 AT1G60190 522 / 1e-177 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 587 / 0 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10007511 [exp] 350 / 5e-111 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 338 / 1e-106 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007317 [exp] 322 / 1e-99 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10006090 [exp] 311 / 5e-96 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 310 / 1e-95 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10040834 [exp] 267 / 1e-79 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.012G078900.2 pacid=42782576 polypeptide=Potri.012G078900.2.p locus=Potri.012G078900 ID=Potri.012G078900.2.v4.1 annot-version=v4.1 ATGATTCTAAAGTTTGACCAAACTGATCGCCGGATTCTCACATTCCCGGCGGTTCATCCCTGTGAAGGAATCTCCCCCGCAACCCTTCTCAGTTCTTTGA TCGATCTCTCTCAAAACATATGCAATTACCAATCAAAGTTGTTTGCTACACAAAGGAAAAATGCCCGTGAAACCATTCGACAAATCGGTCTTCTTCTTCT ATTTTTCGAGGAAATAAGGGACCGTGGATTGGTTCTTTCTGATTCGGCCCTTCTTTGCTTCTCTGAGCTCCACCATGCCTTTCAGAAAGTCCAGTTCTTG TTGGAAGATTGTACGCGTGAAGGTGCAAGGTTATGGATTCTAATGAAGTGTCAACTAGTTGCTACGCATTTTCGAGCACCAATTCGAGCAATTGCGACAG CTCTTGATGTTTTGCCATTGAATTTGATTGATGTCGGTGGTGAAGTGAAGGAGTTGGTTGGATTAATAGCAAAGCAAGCACGTAAGGGTAAATTGGAGCC AGACCCTGTAGATGAATGGGCCTCGAAACAAGTGTTTTCGGTATTGGATCATTTTCAGATGGGAGTTGAGCCTGATTCCAGCTTAATGAAACGGGTTCTT GAGAATCTTGAGATTAGGAACTGGAATGATTGTAACAAGGAAATCAAGTTTTTGGAAGAACAAATTGGTTATCAGTGCTCCGATTGTGATGAAAGAGAGG TTCCATTTCTAAGCAGCTTGTTGGGGTTAATGAGCTACTGCAGGGGAGTGATTTTTGAGACATGGAATAATCGCAACAACGATCAAAGCGATGCCAGGCA CAGCATCGAGGCCCTTAGTTGCATAAATCGTGAAGATTTTCGATGCCCGATTTCACTTGAGCTGATGACTGATCCAGTAACTGTATCGACTGGGCAGACT TATGATCGGTCTTCGATTGAAAGATGGCTCAAAGCTGGAAATATGACCTGTCCCAAAACAGGTGAGAGGCTTACAAGCACAGAGTTAGTTCCCAACACCA CTCTTCGAAAGCTGATCCAGCAGTTCTGCGCCGAGGTAGGCATTTGTGCGTCCAAATCAGGAAGCCGAAGTCGAGACGTAGCCAGGACTATCTCTCCAGG AAGTCCTGCTGCAGCAGAGGCAATGAAATTTCTTTCAGGGTTTCTTGCAAGAAGGCTGGTTTCCGGTTCAAGTGAGCAGAAAACAAAGGCTGCTTATGAA ATTCGGTTACTTGCAAAATCAAACATTTTTAATAGATCTTGTTTGATTGAAGCAGGCACAATCTTACCTCTCATAAACCTTTTATCCTCTTCTTTAGACC ATTACACACAAGAGACTGCTCTTTCAGCTCTGCTGAAGCTCTCGAAGCATACTTGTGGTAAGAAAGAGATAATTGAGAGTGGTGGATTGAAGCCAATCCT TGCAGTTCTTAAAAGAGGGCTGAGTTTGGAAGCAAAGCAAATGGCAGCCGCCACAATTTTTTACCTTGCTTCAGTGAAGTCATATGGGAAATTGATAGGG GAAACACCTGAAGTGGTTCCAGCTCTCGTGGAACTGATCAAGGATGGGACCACTTGTGGCAAAAAGAATGGAGTCGTGGCAATTTTCGGGCTGCTTCTAC ACCCAGCGAATCATCAAAGGGTGCTTGCATCCGGTTCTGTTCCATTGCTGATGGATATGTTGTCATCCTCAAATAACATTGAACTTATAGCAGATTCACT AGCAGTTTTAGCAATCATAGCTGAAAGTGTTGATGGGACATTAGCAATCCTGCAAACTTCGGCTTTATCTACAATCCCAAGGATCTTGCGTTCTCTGCCA TCTAGAACTGCGAGGGAGTATTGCGTTACTGTTCTGCTAAGTTTGTGCAAAAACGGTGGTGCAGAAGCGATTGCGATTTTGGCAAAGGACCATAATCTCA TGAGTTCCCTATATTCACTTCTAACAGATGGGACTTCTCATGGTAGCAGTAAGGCTCGTGCTCTGATAAGAATTCTCCATAAATTTCATGAAACAAGCTC GTCGGGAATGACTGCTTCAGCAGTTCCATGTGAACGACCGGTTCATGTTCGGTAA
AA sequence Show only first row Show all	>Potri.012G078900.2 pacid=42782576 polypeptide=Potri.012G078900.2.p locus=Potri.012G078900 ID=Potri.012G078900.2.v4.1 annot-version=v4.1 MILKFDQTDRRILTFPAVHPCEGISPATLLSSLIDLSQNICNYQSKLFATQRKNARETIRQIGLLLLFFEEIRDRGLVLSDSALLCFSELHHAFQKVQFL LEDCTREGARLWILMKCQLVATHFRAPIRAIATALDVLPLNLIDVGGEVKELVGLIAKQARKGKLEPDPVDEWASKQVFSVLDHFQMGVEPDSSLMKRVL ENLEIRNWNDCNKEIKFLEEQIGYQCSDCDEREVPFLSSLLGLMSYCRGVIFETWNNRNNDQSDARHSIEALSCINREDFRCPISLELMTDPVTVSTGQT YDRSSIERWLKAGNMTCPKTGERLTSTELVPNTTLRKLIQQFCAEVGICASKSGSRSRDVARTISPGSPAAAEAMKFLSGFLARRLVSGSSEQKTKAAYE IRLLAKSNIFNRSCLIEAGTILPLINLLSSSLDHYTQETALSALLKLSKHTCGKKEIIESGGLKPILAVLKRGLSLEAKQMAAATIFYLASVKSYGKLIG ETPEVVPALVELIKDGTTCGKKNGVVAIFGLLLHPANHQRVLASGSVPLLMDMLSSSNNIELIADSLAVLAIIAESVDGTLAILQTSALSTIPRILRSLP SRTAREYCVTVLLSLCKNGGAEAIAILAKDHNLMSSLYSLLTDGTSHGSSKARALIRILHKFHETSSSGMTASAVPCERPVHVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	0	1
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.015G074200 [exp]	4.12	0.7773
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138900 [exp]	4.89	0.8662	DREB38
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	7.93	0.7904	Pt-SCL1.1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G083700 [exp]	9.48	0.8373	ATHB.3
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G110901 [exp]	12.60	0.6908
AT1G73920			alpha/beta-Hydrolases superfam...		Potri.012G060600 [exp]	15.39	0.6454
AT4G39720			VQ motif-containing protein (....		Potri.006G006300 [exp]	26.21	0.8028
AT3G14440		SIS7, ATNCED3, ...	SALT TOLERANT 1, SUGAR INSENSI...		Potri.011G112400 [exp]	28.42	0.8025
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046400 [exp]	33.16	0.7935
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Potri.017G130300 [exp]	41.56	0.7709	Pt-MYB20.1,MYB152

Compare expression of checked genes

Potri.012G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.