Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70370 746 / 0 PG2 polygalacturonase 2 (.1.2) AT1G23760 725 / 0 PG3, JP630 POLYGALACTURONASE 3, BURP domain-containing protein (.1) AT1G60390 690 / 0 PG1 polygalacturonase 1 (.1) AT5G25610 114 / 2e-27 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) AT1G49320 99 / 9e-23 ATUSPL1 unknown seed protein like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040800 [exp] 749 / 0 AT1G70370 819 / 0.0 polygalacturonase 2 (.1.2) Potri.008G190000 [exp] 744 / 0 AT1G70370 841 / 0.0 polygalacturonase 2 (.1.2) Potri.018G036700 [exp] 139 / 1e-35 AT5G25610 307 / 2e-101 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243700 [exp] 137 / 3e-35 AT5G25610 319 / 4e-107 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.006G243600 [exp] 136 / 1e-34 AT5G25610 299 / 2e-98 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136900 [exp] 124 / 3e-31 AT5G25610 211 / 2e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.004G136000 [exp] 124 / 4e-31 AT5G25610 211 / 3e-65 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012700 [exp] 124 / 4e-31 AT5G25610 214 / 2e-66 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Potri.T012500 [exp] 119 / 3e-29 AT5G25610 208 / 4e-64 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033417 [exp] 837 / 0 AT1G70370 681 / 0.0 polygalacturonase 2 (.1.2) Lus10034881 [exp] 837 / 0 AT1G70370 682 / 0.0 polygalacturonase 2 (.1.2) Lus10013009 [exp] 746 / 0 AT1G70370 834 / 0.0 polygalacturonase 2 (.1.2) Lus10029156 [exp] 735 / 0 AT1G70370 820 / 0.0 polygalacturonase 2 (.1.2) Lus10022114 [exp] 139 / 2e-35 AT5G25610 357 / 5e-121 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007674 [exp] 135 / 3e-34 AT5G25610 353 / 2e-119 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10032324 [exp] 122 / 5e-31 AT1G49320 184 / 4e-57 unknown seed protein like 1 (.1) Lus10003263 [exp] 122 / 3e-30 AT5G25610 266 / 7e-87 RESPONSIVE TO DESSICATION 22, BURP domain-containing protein (.1) Lus10007011 [exp] 119 / 2e-29 AT1G49320 213 / 7e-68 unknown seed protein like 1 (.1) Lus10006667 [exp] 119 / 2e-29 AT1G49320 196 / 4e-61 unknown seed protein like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03181 [poplar] [flax] BURP BURP domain
Representative CDS sequence Show only first row Show all	>Potri.012G079200.1 pacid=42783776 polypeptide=Potri.012G079200.1.p locus=Potri.012G079200 ID=Potri.012G079200.1.v4.1 annot-version=v4.1 ATGGGCAGAGAAGTCATGGCTGGCATGAGTGTTCTCTTCTTGATTCTCTTCTTATCATTCTCATCTTGCAAGGTTTCTTTCGCCGCTACAACTACAAGTA GCCTCCATAAACAAAACTTATCAACCCCACTTAACCCTTTTTCCCCAAGAGCATCTTTGATCCGTTATTGGAACAAACATATCTCGAACAGCCTACCTAA ACCACTGTTTCTCCTCTCCAAAGCTTCTCCACTCAGTGCCATAGACTCAGCGATCCTCACTAAACTTGCCACTCAAAACTCTCTTTCCTTGCACCTTGAC TCATTCTGCTCTTTAGCCAACTTATTTTGCTTCTTTGACACAAAACAAAGTTTACGCAATCATGACCAAGATTCCAACTTTGCACTTTACTCCAACAAGC GCTTTGCGAACTATGGTGGATCAAGACTCAGCGGGGTCGACTCATTTAAGAACTACTCCAACGGGTTGAACACGGTCGCCGACTCTTTCATAAGATACAG CCGTGAATCTACAGGCCATAGTGAGACATTCACAAACTATGGTAACGATGGAAATGTCGCCAATGCAACATTTGGCAACTATGGCTCTGCTGCCACTGGT GGTTCTGGCACGTTCAAGAACTATGATAACCGAGTCAATGTGCCTGGTCTTCGATTCACTACTTATGCCTCAGATGGAAATGACCATAAGCTCTCCTTTT CAAGCTACAGTGATGAAACGAATGTAGGTGCTCAAGGATTCAATAGCTATGGCAAGAAAGGAAATGGGGTTCCATCTGAGTTCGTATCCTATAGTCGAGA TTCAAACGGTATTGAATCTAAATTTACTGGCTATGGTGAGTTAGGTAATGCAGCAAATGACTCTTTCACTAGTTATGGAAACTCAGGTAACAACCCACAT AACAACTTCAAGAGTTATGGAAGTGGTGCAAACTCTGCTAGTGATCGCTTCTCAAGCTACAGGAACGGAGCCAATGTTGGTCAGGATTCATTTCAATCTT ATGCCAAGGATTCAAATTCAGGGAAAGTGAGCTTCGCAAATTATGGAAAATCATTTAACCCTGGAAATGATTCATTCATAGATTATGGCAAAGGTTCAAA GGGTATGACCACCATTGGGTTCAAAAGTTATAGCCTTGATCGATCATTCATGGTTTATAAAGATAAGGGTGTTACATTTGCTGGTTACAGTAACACAAGT AGTATGCCGAGTGACAATGGCGTTTCTGTAAATAAGAGACGGGTGGAACCAGGGAAGTTTTTCAGGGAATCCATGCTGAAGCCTGGGAATGTTATGGTAA TGCCCGACATTAGGGACAAAATGCCAGAGAGGTCATTTTTACCCAGGTCAATTGTTTCAAAATTACCATTCTCAACCACAAAAATGGCCAAGCTCAAGGA CCTTTTCCATGCGTCAGATAACTCAACCATGACGCGCGTGCTTATCAACGCACTAGCCGAGTGCGAGAGGGCACCAAGCCACGGTGAGACCAAGCGATGC GTTGGTTCTGTCGAGGACATGATCGACTTTGCAGTTTCGGTCTTGGGCCACAACGTGACGGTCAGGACCACCGAGAATGTTAACGGGTCAAAGAAAAGAG TGATGATCGGATCGGTTGAAGGGATCAACGGCGGACAAGTGACCAAATCAGTGTCCTGTCACCAAAGCTTGTACCCGTATTTATTGTATTACTGTCATTC GGTACCCAGAGTTAGGGTTTACGAGGCAGACATTGTTGATGTTGAGAGCAAAGAAAAGATCAACGTTGGTGTTGCCATTTGTCATGTTGACACATCAGCT TGGGGTCCAGAACATGGAGCCTTTGTTGCCCTAGGGTCCAGCCCTGGGAAAATTGAGGTTTGCCACTGGATCTTTGAGAACGACATGACTTGGACCATTG CGGACAGAGGGTAG
AA sequence Show only first row Show all	>Potri.012G079200.1 pacid=42783776 polypeptide=Potri.012G079200.1.p locus=Potri.012G079200 ID=Potri.012G079200.1.v4.1 annot-version=v4.1 MGREVMAGMSVLFLILFLSFSSCKVSFAATTTSSLHKQNLSTPLNPFSPRASLIRYWNKHISNSLPKPLFLLSKASPLSAIDSAILTKLATQNSLSLHLD SFCSLANLFCFFDTKQSLRNHDQDSNFALYSNKRFANYGGSRLSGVDSFKNYSNGLNTVADSFIRYSRESTGHSETFTNYGNDGNVANATFGNYGSAATG GSGTFKNYDNRVNVPGLRFTTYASDGNDHKLSFSSYSDETNVGAQGFNSYGKKGNGVPSEFVSYSRDSNGIESKFTGYGELGNAANDSFTSYGNSGNNPH NNFKSYGSGANSASDRFSSYRNGANVGQDSFQSYAKDSNSGKVSFANYGKSFNPGNDSFIDYGKGSKGMTTIGFKSYSLDRSFMVYKDKGVTFAGYSNTS SMPSDNGVSVNKRRVEPGKFFRESMLKPGNVMVMPDIRDKMPERSFLPRSIVSKLPFSTTKMAKLKDLFHASDNSTMTRVLINALAECERAPSHGETKRC VGSVEDMIDFAVSVLGHNVTVRTTENVNGSKKRVMIGSVEGINGGQVTKSVSCHQSLYPYLLYYCHSVPRVRVYEADIVDVESKEKINVGVAICHVDTSA WGPEHGAFVALGSSPGKIEVCHWIFENDMTWTIADRG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	0	1
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	2.23	0.8234
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.017G060300 [exp]	3.16	0.8207
AT5G01020			Protein kinase superfamily pro...		Potri.016G143200 [exp]	4.47	0.7821
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	4.47	0.7743	Pt-RALFL23.3
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028100 [exp]	8.36	0.7679
AT5G25460			Protein of unknown function, D...		Potri.003G059800 [exp]	10.95	0.7416
AT3G09730			unknown protein		Potri.006G130600 [exp]	13.19	0.7023
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	13.49	0.7388
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.002G043300 [exp]	13.74	0.7182
					Potri.006G229100 [exp]	18.89	0.7876

Compare expression of checked genes

Potri.012G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.