Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 400 / 8e-136 ATPAO1, APAO polyamine oxidase 1 (.1) AT1G65840 142 / 5e-37 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 139 / 8e-36 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 125 / 4e-31 ATPAO2 polyamine oxidase 2 (.1) AT3G10390 120 / 6e-29 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G29720 119 / 1e-28 ATPAO5 polyamine oxidase 5 (.1) AT1G62830 101 / 2e-22 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT4G16310 96 / 2e-20 LDL3 LSD1-like 3 (.1) AT3G13682 88 / 2e-18 LDL2 LSD1-like2 (.1) AT5G14220 43 / 0.0005 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074600 [exp] 607 / 0 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 426 / 1e-145 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 419 / 4e-143 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.017G144001 [exp] 145 / 4e-38 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.004G075800 [exp] 144 / 1e-37 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 124 / 2e-30 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 122 / 8e-30 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.002G013100 [exp] 114 / 7e-27 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 105 / 6e-24 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019725 [exp] 538 / 0 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10042127 [exp] 524 / 0 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10042168 [exp] 521 / 0 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10041898 [exp] 496 / 1e-170 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10039599 [exp] 405 / 2e-137 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 313 / 5e-102 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10004260 [exp] 199 / 2e-59 AT5G13700 99 / 5e-23 polyamine oxidase 1 (.1) Lus10020726 [exp] 119 / 5e-29 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10015996 [exp] 120 / 1e-28 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10029804 [exp] 119 / 1e-28 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.012G079500.1 pacid=42783835 polypeptide=Potri.012G079500.1.p locus=Potri.012G079500 ID=Potri.012G079500.1.v4.1 annot-version=v4.1 ATGACTTCTGCTTCACCATCTCCCACAGTCATCATCATCGGAGCTGGAATGTCAGGGATTTTAGCAGCAAAGACACTGCATGATTCTGGAATTCAAGATA TATTGATTTTAGAAGCAAACAGCAAGATTGGTGGTCGGATTCATAGCGTTCAATTTAGAGGACACACTGTTGAGTTGGGTGCAAATTGGGTTATTGGTGG AGGTCCTAGGTCCAATCACTTGTATGAAATTGCTAGCAAACTCAACCTTAAGACCTACTTGTCAGATTATGGAAATATCTCGGCAAACATCTATAAACAA GAGGGTGGATTATACCCCAAGCATATAGTCAGCGCAGCATTAGAAGTTGCTGAAACAAGGGATCAATTCTGCACGAGCTTTTCCACTAGACTATCTGCAC CAGGACACGATCGTGATGATGTGTCAATACTGGTATCGCAGCGCCTCTTCAAAGAGGTGCCGACAACTCCTCTTGACATGGTTATAGACTATTTCTACAA CGATTATGAAGATGCAGAACCTCCAAGAGTGACAAGTTTAAAGAACACCATTCCTCGCTATGAGTTTTTAGACTTTGGGGATCAAACATATTTCTTGGCT GATTCAAGAGGCTTTGAGAGTATACTTATTTACATTGCCAAGCAGTTTCTCTCCCACAAACATGAAGTAATAAGGGATCAGAGGCTCAAGTTAAACAAGG TGGTTAGAGAGATCAATTATTCTAAGAGTGGAGTCCAAGTAAAAACTGAAGATGGTTCTGTGTACCAAGCCAAATATGTGATTGTCTCTGTGAGCGTTGG GGTACTTCAAAGTGACCTCATTGTGTTCAAGCCACACTTACCTCAATGGAAGACACAGGCAATATATGAATTCGATATGGCTGTATACACCAAGATATTC CTGAGATTCCCTTACAAGTTTTGGCCCTCTGGACCCGAGACAGAATTCTTCCTCTATGCCCACGAAAAACGTGGATACTACCCGATATGGCAGCACTTGG AGACTGAAATGCCAGGATCAAACATTTTATTTGTAACAGTAACAGATGAGGAAGCAAAGAGGATAGAGCAGCAACAGGATATTAAAATCCAAGAGGAGAT CATGGATGTGCTGAAAAAAATGTTTGGTAACGACATTCCAGAACCAGATGAAATTCTTATTCCTAGATGGTGGTCCAACAGGTTCTTCAAGGGTAGCTTC TCAAATTGGCCTATTGGATATAGTCAACGAAGACACATGCAACTAAAGGAACCTGTTGGTCGAATTTATTTTAGTGGGGAGCACACCTATTCTAGATACT TGGGATATGCTGATGCTGCATATTTTGCAGGTATCGAGACTGCAAATCATTTAATCAGGTGCATTAAACATGAAAAATATTGCAATGGCTATGATCGGCA TTCAACAATAGACAGATTACACAACGAAGATCCTTATGATCCTGATGCATGA
AA sequence Show only first row Show all	>Potri.012G079500.1 pacid=42783835 polypeptide=Potri.012G079500.1.p locus=Potri.012G079500 ID=Potri.012G079500.1.v4.1 annot-version=v4.1 MTSASPSPTVIIIGAGMSGILAAKTLHDSGIQDILILEANSKIGGRIHSVQFRGHTVELGANWVIGGGPRSNHLYEIASKLNLKTYLSDYGNISANIYKQ EGGLYPKHIVSAALEVAETRDQFCTSFSTRLSAPGHDRDDVSILVSQRLFKEVPTTPLDMVIDYFYNDYEDAEPPRVTSLKNTIPRYEFLDFGDQTYFLA DSRGFESILIYIAKQFLSHKHEVIRDQRLKLNKVVREINYSKSGVQVKTEDGSVYQAKYVIVSVSVGVLQSDLIVFKPHLPQWKTQAIYEFDMAVYTKIF LRFPYKFWPSGPETEFFLYAHEKRGYYPIWQHLETEMPGSNILFVTVTDEEAKRIEQQQDIKIQEEIMDVLKKMFGNDIPEPDEILIPRWWSNRFFKGSF SNWPIGYSQRRHMQLKEPVGRIYFSGEHTYSRYLGYADAAYFAGIETANHLIRCIKHEKYCNGYDRHSTIDRLHNEDPYDPDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.012G079500 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	6.00	0.8455
AT5G45540			Protein of unknown function (D...		Potri.015G112012 [exp]	6.48	0.8415
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	7.48	0.8037
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	7.93	0.7925
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	8.24	0.8371
AT5G67620			unknown protein		Potri.007G005600 [exp]	8.48	0.8010
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	9.69	0.7202
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	11.48	0.7825
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	13.26	0.7610
AT5G45540			Protein of unknown function (D...		Potri.015G116100 [exp]	15.49	0.8103

Compare expression of checked genes

Potri.012G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.