Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47990 535 / 0 SIS3 SUGAR-INSENSITIVE 3 (.1) AT1G60360 69 / 7e-13 RING/U-box superfamily protein (.1) AT5G66070 67 / 1e-12 RING/U-box superfamily protein (.1.2) AT4G11680 67 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G57750 65 / 6e-12 RING/U-box superfamily protein (.1) AT3G18930 66 / 2e-11 RING/U-box superfamily protein (.1.2) AT2G17450 62 / 3e-11 RHA3A RING-H2 finger A3A (.1) AT1G18770 60 / 3e-11 RING/U-box superfamily protein (.1) AT5G56340 64 / 5e-11 ATCRT1 RING/U-box superfamily protein (.1) AT5G55970 63 / 7e-11 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074900 [exp] 692 / 0 AT3G47990 506 / 0.0 SUGAR-INSENSITIVE 3 (.1) Potri.004G122000 [exp] 70 / 3e-14 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.010G206200 [exp] 67 / 5e-13 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 69 / 6e-13 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 68 / 3e-12 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 66 / 4e-12 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 66 / 4e-12 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 67 / 5e-12 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 66 / 1e-11 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042126 [exp] 439 / 2e-154 AT3G47990 399 / 6e-139 SUGAR-INSENSITIVE 3 (.1) Lus10002369 [exp] 283 / 3e-95 AT3G47990 252 / 1e-83 SUGAR-INSENSITIVE 3 (.1) Lus10041359 [exp] 68 / 3e-12 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10020258 [exp] 68 / 5e-12 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 67 / 5e-12 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10028063 [exp] 66 / 1e-11 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10025612 [exp] 66 / 1e-11 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10016163 [exp] 64 / 1e-11 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10002637 [exp] 66 / 2e-11 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10025162 [exp] 63 / 2e-11 AT1G20823 190 / 6e-62 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.012G079600.2 pacid=42783161 polypeptide=Potri.012G079600.2.p locus=Potri.012G079600 ID=Potri.012G079600.2.v4.1 annot-version=v4.1 ATGGCTATGAGAGGCATCGATTTCAAGTGGTACGATGGCTTCTTCTTGTCAATGCTAGCAACAAGTGCAATCATTGTTGCTATCAATTGGAGGCGTTATC ATATTTGTACATACCCATTGCACATATGGATAATGGTTGATTACACTACCGTTTTTGTGTTTCGCTTGTTGATGTTTATAGATAATGGACTTGCTGCTGG AATGGGATTGGATTTTGGGCGGCAGCAGAGATATGCCCGTTTTTGTGGAAGAATTGTCGTTCTTTCAATTCTCTCTCTGCTGCTATATCCATTTCTTTGG GCTTGGACTATAACTGGCACACTCTGGTTCACGAGGGCAAGAGATTGTTTACCAGAAGAAGGTCAGAAATGGGGTTTTCTTATATGGTTGCTTTTCAGCT ACTGTGGACTGATTGGTATCGCTTGCATCTCTGTTGGAAAGTGGCGGGTACGAAGACAAGCACACCACTTACGTGCTCAGCAAGGCATTCCTATTTCAGA ATATGGGGTATTGGTTGATTTGATCCGAGTGCCTGATTGGGCGTTTGAAGCTGCAGGTCAAGAAATGAGAGGAATGGGCCAAGATGCTGCTGCATATCAA CCTGGACTCTATTTGACTCCCACTCAGAGAGAAGCAGTGGAGGCGCTCATTCAAGAACTTCCAAAGTTCAGGCTCAAGGCTGTTCCAACTGATTGCAGTG AATGTCTCATCTGCCTCGAAGAGTTCTATGTAGGGAACGAGGTTCGTGGCCTACCTTGTGCTCATAATTTCCATGTTGAATGTATTGATGAGTGGCTTCG ACTGAATGTGAAATGTCCACGGTGTCGCTGCTCAGTCTTCCCTAATCTTGACCTTAGTGCCATATCTAATCTCCGTGCTGATTCGGAAAGATCTCCTGCC ACTGTAACAACCAACCGTTATGTGAGAACTGTGCCTTCCAGCCACAGCTATCTGTTGAGAATGCAGGGTCTGCTGTGGCCTGTCCAATCTGGGAATGCTG GGGATCCCACTGATGCAGATATTGATGTGGAAGCTGCTGAGAATGGAAGTGCACACATGGCAACCGGGGAACGAACAGGTACGGAATCAGTTTCATCAGC TGGACTTGCGCTTGTGGGTCAGTCCACCCAAACTCATCACTAG
AA sequence Show only first row Show all	>Potri.012G079600.2 pacid=42783161 polypeptide=Potri.012G079600.2.p locus=Potri.012G079600 ID=Potri.012G079600.2.v4.1 annot-version=v4.1 MAMRGIDFKWYDGFFLSMLATSAIIVAINWRRYHICTYPLHIWIMVDYTTVFVFRLLMFIDNGLAAGMGLDFGRQQRYARFCGRIVVLSILSLLLYPFLW AWTITGTLWFTRARDCLPEEGQKWGFLIWLLFSYCGLIGIACISVGKWRVRRQAHHLRAQQGIPISEYGVLVDLIRVPDWAFEAAGQEMRGMGQDAAAYQ PGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECLICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSAISNLRADSERSPA TVTTNRYVRTVPSSHSYLLRMQGLLWPVQSGNAGDPTDADIDVEAAENGSAHMATGERTGTESVSSAGLALVGQSTQTHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.012G079600 [exp]	0	1
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	4.00	0.7615
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	17.02	0.6823
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	17.88	0.7381
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	24.18	0.7115
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Potri.012G075100 [exp]	24.49	0.6472	Pt-PI3.1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	28.98	0.6842
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	30.98	0.7361
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.012G097700 [exp]	51.48	0.7241
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	58.48	0.6942
AT5G02520			unknown protein		Potri.004G077400 [exp]	68.92	0.6697

Compare expression of checked genes

Potri.012G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.