Plant FIBer expression Database

Potri.012G079700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27510 599 / 0 Protein of unknown function (DUF3506) (.1)
AT4G33630 333 / 7e-105 EX1 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G075000
[exp]
1025 / 0 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1)
Potri.017G043100
[exp]
365 / 2e-117 AT4G33630 674 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027696
[exp]
793 / 0 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1)
Lus10039967
[exp]
764 / 0 AT1G27510 621 / 0.0 Protein of unknown function (DUF3506) (.1)
Lus10042125
[exp]
437 / 1e-146 AT1G27510 358 / 7e-116 Protein of unknown function (DUF3506) (.1)
Lus10007064
[exp]
335 / 1e-105 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Lus10020435
[exp]
196 / 1e-53 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2)
Lus10002370
[exp]
170 / 3e-47 AT1G27510 164 / 2e-45 Protein of unknown function (DUF3506) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12014 DUF3506 Domain of unknown function (DUF3506)
Representative CDS sequence
>Potri.012G079700.1 pacid=42783971 polypeptide=Potri.012G079700.1.p locus=Potri.012G079700 ID=Potri.012G079700.1.v4.1 annot-version=v4.1
ATGATGGTGGGAAATAATGTCTGTGGGATGGGGCAATCGATAACTACAGTGCCCCAGTTAAGACCCTTTTGTTGCATTGATTTCTCAGCCCACAAGTCTA
CCAATTTTAGCTTTCTTTTCGGTTGGGGCCGCTCTTCTGCTCTTCTCAACAACAACAGGAATTCTTCTTTTTCTCTAAATAAAACCACCCGCAAGAACTC
AAATTTGCACTGCTGTCGTTGCAACAATAGCAATAATACTTTGGAGTGGGACTGGAACAGATGGAACCGCCATTTTTCTGAGATTGAACAAGCTGAAAGT
TTTGCTTCTGTTCTCAAGTTTCAACTGGAGGATGCAATTGAAAATGAAGACTTTCAAGAGGCTGCAAAGTTGAAAATAGCCATTGCCGAAGCTACTTCAA
AGGATAATGTAGCCCATATAATGTCTGAATTGAAGAATGCAGTAGAGGAAGAACGATACCACGATGCTTCAAAATTGTGTAAATATACAGGAAGTGGATT
GGTAGGTTGGTGGGTGGGCTACTCATCGGATTCTGATGATCCCTTTGGCAGACTGGTTCGCATAACACCTGGCGTGGGCAGATTTGTTGGCCGGAGTTAT
ACTCCAAGGCAGTTGGTCAGTTCATCTCTTGGAACTCCATTATTTGAGATTTTTGTGGTCAAAGATGCTGAGGAAAAGTATGCTATGCAAGTAGTATGTC
TGCAACGAACTAAAGGAAGGTCAACAAACTCTACCAGTTCACGATCTAAATCTACACAGGTTCCATCCATTTCTGAAGATAAGAATGCATCTGTAGTGGA
TGTTCAGGAAAATGACATTAAGACAGAGAGGAGTGAGGGGAAGAGCATAAATATTGAGGAAGCAACTGAGGAAGGGATAAAAAGTGTGATAAATTTTCTC
AAAGATAAGATTCCTGGGTTAAAAGTAAAAGTTGTGAACATTAACACTACAGACGAAGTGATGGAGGATAGTGATTTTGTGAAGCAGTTGATGCAAGAAG
ATGATGACAAGACAGGGTCTAGTGAGAATTCGGAAGAACATGCCAGTGATCTAGAAGAGATTCAGCCTGATGAGGTAGCTTTGGAAGGCAGTAGTGATTC
CTCAGAAGATGGAAAAGATTTAGATATGAAGCTTTTTATTGGAGGGGTTGTACATAACAATGAAGATACTCCGAGCAAGGATGAGTATGTGCGTCTTCCA
GCTGAAATTAAAGATATGGAGAGAGATTCTTTTGTACTACATGTTCAAAGAAGTCTAGATTCTGGCAGTAAAGAAAGTAAAGCATCCAAGGTGAAAGTGG
CAGCTATAACAGCTAAAGGTATTTCTGAGCTTATGCCTTCAGATGTTGCCAAGGCATTTTGGGGCGCAGACAAAGTTTCTTCAAAGGTTTCAAGAAATGT
GCGTGAAATCGTGAAACTTGCTGTTAGTCAGGCACAGAAGCAAAGCAGTTTATCTGAGTATACAACTTTCAGTAGAGTTACAACTTCTAATAGCAGTTTA
GATCCATTTGACGGCCTATATGTTGGTGCATTTGGGCCTTATGGGACTGAGATAGTACAATTGAGGCGTAAATATGGTCATTGGAATATTGAGGATGACC
AATCCTCAGATGTGGAGTTCTTTGAGTATGTTGAGGCTGTGAAGCTAACTGGGGATCTTAATGTCCCTGCTGGCCAGGTGACATTTCGTGCCAGAATTGG
GAAAGGAAGTCGCAATTCCAACCGTGGGAAGTATCCAGATGAACTGGGAGTGGTGGCAAGTTACAAAGGTCAAGGAAGAATAGCAGAATTTGGCTTCAAA
AATCCACAATGGGTTGATGGTGAACTTCTTCAACTTAATGGCAGGGGCATCGGACCATATGTCAAAGGGGCAGATCTGGGTTTCCTTTATGTTGTTCCAG
AACAAAGTTTCCTTGTGCTGTTTAACCGGTTGAAGCTACCAGACTAA
AA sequence
>Potri.012G079700.1 pacid=42783971 polypeptide=Potri.012G079700.1.p locus=Potri.012G079700 ID=Potri.012G079700.1.v4.1 annot-version=v4.1
MMVGNNVCGMGQSITTVPQLRPFCCIDFSAHKSTNFSFLFGWGRSSALLNNNRNSSFSLNKTTRKNSNLHCCRCNNSNNTLEWDWNRWNRHFSEIEQAES
FASVLKFQLEDAIENEDFQEAAKLKIAIAEATSKDNVAHIMSELKNAVEEERYHDASKLCKYTGSGLVGWWVGYSSDSDDPFGRLVRITPGVGRFVGRSY
TPRQLVSSSLGTPLFEIFVVKDAEEKYAMQVVCLQRTKGRSTNSTSSRSKSTQVPSISEDKNASVVDVQENDIKTERSEGKSINIEEATEEGIKSVINFL
KDKIPGLKVKVVNINTTDEVMEDSDFVKQLMQEDDDKTGSSENSEEHASDLEEIQPDEVALEGSSDSSEDGKDLDMKLFIGGVVHNNEDTPSKDEYVRLP
AEIKDMERDSFVLHVQRSLDSGSKESKASKVKVAAITAKGISELMPSDVAKAFWGADKVSSKVSRNVREIVKLAVSQAQKQSSLSEYTTFSRVTTSNSSL
DPFDGLYVGAFGPYGTEIVQLRRKYGHWNIEDDQSSDVEFFEYVEAVKLTGDLNVPAGQVTFRARIGKGSRNSNRGKYPDELGVVASYKGQGRIAEFGFK
NPQWVDGELLQLNGRGIGPYVKGADLGFLYVVPEQSFLVLFNRLKLPD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G27510 Protein of unknown function (D... Potri.012G079700
[exp]
0 1
AT1G62390 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1,... Potri.004G002900
[exp]
1.73 0.8988
AT4G35470 PIRL4, DREB1C plant intracellular ras group-... Potri.001G144100
[exp]
3.00 0.8845
AT3G07310 Protein of unknown function (D... Potri.002G247700
[exp]
5.65 0.8834
AT1G31220 Formyl transferase (.1) Potri.012G107500
[exp]
10.67 0.8891
AT3G26922 F-box/RNI-like superfamily pro... Potri.011G104300
[exp]
13.78 0.8575
AT3G44190 FAD/NAD(P)-binding oxidoreduct... Potri.001G217800
[exp]
15.16 0.8552
AT3G46740 MAR1, TOC75-III... MODIFIER OF ARG1 1, translocon... Potri.001G072800
[exp]
17.74 0.8814 Pt-TOC75.2
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.008G104400
[exp]
18.49 0.8192
AT4G24690 AtNBR1 Arabidopsis thaliana next to B... Potri.012G085700
[exp]
20.73 0.8414
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.012G105900
[exp]
25.90 0.8338 CLPC.1

Potri.012G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.