Plant FIBer expression Database

Potri.012G079800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36330 219 / 2e-70 Uncharacterised protein family (UPF0497) (.1)
AT5G62820 179 / 1e-54 Uncharacterised protein family (UPF0497) (.1)
AT5G40300 159 / 2e-47 Uncharacterised protein family (UPF0497) (.1)
AT2G38480 63 / 8e-12 Uncharacterised protein family (UPF0497) (.1)
AT4G11655 56 / 4e-09 Uncharacterised protein family (UPF0497) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G075100
[exp]
336 / 2e-116 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1)
Potri.016G128200
[exp]
81 / 3e-18 AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1)
Potri.001G102600
[exp]
42 / 0.0001 AT4G11655 105 / 2e-28 Uncharacterised protein family (UPF0497) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042123
[exp]
238 / 2e-77 AT2G36330 228 / 2e-73 Uncharacterised protein family (UPF0497) (.1)
Lus10002372
[exp]
237 / 3e-77 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1)
Lus10014537
[exp]
149 / 2e-40 AT3G16180 174 / 4e-49 Major facilitator superfamily protein (.1)
Lus10032148
[exp]
82 / 1e-17 AT2G36330 82 / 7e-18 Uncharacterised protein family (UPF0497) (.1)
Lus10001266
[exp]
76 / 3e-16 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1)
Lus10012216
[exp]
72 / 7e-15 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1)
Lus10032147
[exp]
64 / 1e-12 AT2G36330 89 / 2e-22 Uncharacterised protein family (UPF0497) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0396 Marvel-like PF04535 DUF588 Domain of unknown function (DUF588)
Representative CDS sequence
>Potri.012G079800.1 pacid=42782623 polypeptide=Potri.012G079800.1.p locus=Potri.012G079800 ID=Potri.012G079800.1.v4.1 annot-version=v4.1
ATGGAGACAGCGAGATCCGATTCCAAGCCGAAAACCCAAGTCCCACGATCCTCTTCTTCAAACTCCGACTCCCAATCCCAATCCCCTTACCGTTTCCAAT
CCCCTCACCGATCCGACTATGGCGACCCTCTCGAAAGCCCTCCCTACGCCTCTCCCTCTGCTTCCCCTGAAAAGTCACTCTCTCCGCTCCAAAACTCCAT
GGCCGTCGTTGCCGTTGACACCCACAAGTCTACTCAGTACTCCCCCGCACCTTCCTCTTTCCCGCCGGATAACCTCTCTGCGCCTCCTGAGCTGGTGCTG
AACAAGGTGGCGAGGGAGAGAGTGGCAGATGGGGTGGTGAGGAAGGTGGGGACGGCGTCGGTGGCGAGGAGGTCGAGGAAAGAAGAGAAGATGAGGACTG
GTGAATTAGGGTTTAGGGTTAGTGAGATTATCATGTGTTTGATATCTTTTGCTGTTATGGCTGCTGATAAGATTCAGGGATGGAGTGGTGATTCCTTTTA
TAGATATATAGAGTATAGGTATTGTTTGGCCGTGAATGTGATTGGGTTTGTGTATGCTGGATTTCAAGCTTATGATTTAAGCTATCAGCTAGCCACCGGG
AAACATGTGATTCGACACCATCTTCGTCAACATTTTAATTTCTTCATGGATCAGATACTAGCATATCTTCTGGTATCAGCATCCTCTTCAGCCGCCACTC
GGGTTGATGACTGGCAATCTAACTGGGGCAAAGATGAGTTCACAGAGATGGCAACTGCTTCGGTTGTCATGGCCTTCCTGGCTTTTATTGCCTATGCCGG
TAGCTCCATTATATCTGGTTACAATCTATATAACCGGGACGCAATATGA
AA sequence
>Potri.012G079800.1 pacid=42782623 polypeptide=Potri.012G079800.1.p locus=Potri.012G079800 ID=Potri.012G079800.1.v4.1 annot-version=v4.1
METARSDSKPKTQVPRSSSSNSDSQSQSPYRFQSPHRSDYGDPLESPPYASPSASPEKSLSPLQNSMAVVAVDTHKSTQYSPAPSSFPPDNLSAPPELVL
NKVARERVADGVVRKVGTASVARRSRKEEKMRTGELGFRVSEIIMCLISFAVMAADKIQGWSGDSFYRYIEYRYCLAVNVIGFVYAGFQAYDLSYQLATG
KHVIRHHLRQHFNFFMDQILAYLLVSASSSAATRVDDWQSNWGKDEFTEMATASVVMAFLAFIAYAGSSIISGYNLYNRDAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G36330 Uncharacterised protein family... Potri.012G079800
[exp]
0 1
AT3G12410 Polynucleotidyl transferase, r... Potri.006G031400
[exp]
1.00 0.8201
AT5G14240 Thioredoxin superfamily protei... Potri.001G334100
[exp]
4.58 0.7816
AT2G03500 GARP Homeodomain-like superfamily p... Potri.006G155200
[exp]
6.00 0.8001
AT1G02090 ATCSN7, COP15, ... FUSCA 5, CONSTITUTIVE PHOTOMOR... Potri.002G137400
[exp]
13.67 0.7611
AT4G30240 Syntaxin/t-SNARE family protei... Potri.015G078400
[exp]
14.28 0.7306
Potri.016G028800
[exp]
17.32 0.7614
AT1G32370 TTM1, TOM2B tobamovirus multiplication 2B ... Potri.001G145500
[exp]
19.44 0.7635 Pt-TTM1.1
Potri.005G182850
[exp]
20.34 0.6656
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.016G081700
[exp]
29.84 0.7313
AT1G29850 double-stranded DNA-binding fa... Potri.001G352600
[exp]
33.31 0.7228

Potri.012G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.