Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27500 754 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G27960 707 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 667 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31240 147 / 4e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075300 [exp] 1192 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 790 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 698 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 688 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 627 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 624 / 0 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G222900 [exp] 177 / 5e-47 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 54 / 2e-07 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002376 [exp] 966 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 962 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 683 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008786 [exp] 681 / 0 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003201 [exp] 681 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022231 [exp] 678 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033883 [exp] 134 / 2e-32 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 130 / 4e-31 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.012G080100.3 pacid=42783116 polypeptide=Potri.012G080100.3.p locus=Potri.012G080100 ID=Potri.012G080100.3.v4.1 annot-version=v4.1 ATGCCTGGAATTGTTATGGATGGAATTGATGAGGAAGGAATAGTGAATGAAATGAATGGAAATTCAGTGCCGATGAAGGACAATTCTGTGCCTTATAAGT CCCCAAGGAGAAAATCGAGTCCGCACAGCCGTCGCAGTACTGGCCTAGATCCTCCTATAGATGGAGTTTCTGTTTATGGAGTGGCAGTTGATGGGGTACT TGACACCTCCATCGAGCAGCTTTATGAGAATGTGTGTGATATGCAGAGTTCTGATCAGTCTCCCTTAAGGCATAGCTTTGGATCTGATGGTGAAGAGTCT AGGATTGATTCTGAGTTGCGCCATCTGGTAGGAGGAGAGATGAGAGAGGTTGAGATAATGGAAGAGGAAGAGGAAGAGGAAGAGGTAGATAAACCAGAAC TTGGCACTCATAGCAACTCTTCTTCCAAGAAGGGAAGTTCATCAGGGAGCAAGAAGTCGGGGAACTTGGACAAGACCAAATCTGCAAGCACCAAGTCTGT CTCTTCAAGAACCTCAAAGAAGCCTTTGGACTCTGAAGCATCATCGAAGTTGACTCCTAAGGGAAAATGTCCTCCAGAGAAACCTCCTATTGACAAGCAG AATGATAAGAATTTGAAAAAAGGAAATGTGGGAGTCAGATTGATGAAGAAACAAAGAAATTCTTCACTGGGAGGAGTAAAGTTACCGAATGGAACCGAGG ATTCATCAGAATCGGGTTTAGATAATCCAGATCTTGGACAATTTTTGCTAAAGCAAGCAAGGGATTTGATTTCTTCAGGGGATAATCCCCAGAAAGCTCT TGAATTAGCTCTTCGAGCATCTAAATCATTCGAAATATGTGCAAATGATAAACCCAGTTTAGAATTGGTAATGTGTTTGCATGTCACAGCAGCTATACAC TGCAGCATAGGCCAGTATAGCGAGGCCATTCCCATTCTTGAGCATTCAATTGAGATTCCAGTGCCCGAGGAAGGCCAAGAGCATGCCCTTGCCAAGTTTG CTGGTTACATGCAGTTGGGTGATACTTATGCGATCCTGGGCCAGCTTGAGAAGTCAACAAAGTGCTACTCAACAGGATTGGAAGTGCAGAAACAAGTTCT GGGAGAAACTGACCCTAGAGTTGGCGAGACTTGTAGATATTTGGCTGAGGCCCATGTTCAAGCATTGCAGTTTGATGATGCGCAGAAGGTTTGCCAGATG GCTCTAGACATTCATAGAGACAACGGTTCTCCTGCTTCTCTAGAAGAGGCAGCGGATCGACGGCTTATGGGTCTTATATGTGAAACAAAGGGAGATCATG AAGATGCTCTTGAACATCTTGTGTTAGCCAGTATGGCCATGGTGGCAAATGGCCAGGAAGCTGAGGTGGCCTGTGTTGATTGTAGCATCGGAGATGCGTA CTTATCTTTGTCTAGGTATGATGAGGCTATTTTTGCTTATCAAAAAGCACTCACAGCTTTTAAGATAACAAAAGGAGAGAATCATCCATCTGTTGCTTCA GTTTTTGTTCGTTTGGCTCATTTATGTAACAGAACTGGGAAGTTGAGGGACTCAAAATCATATTGTGAGAATGCCCTTGGGATTTATGAAAAGCCCTTGC TAGGGATCCCTCCAGAGGAGGTTGCTAGTGGTCTCACTGATGTTTCTGCTGTCTATGAATCAATGAATGAGCTCGATCAGGCAATCAAGTTGCTAAAGAA GGCGTTAAAGATATATAAAGATGCACCTGGTCAACAAAGCACAATTGCTGGAATTGAAGCTCAAATGGGTGTCATGTACTACATGCTGGGAGATTATTCC GAATCTTACAACTCCTTTAAGAACGCAATTTCAAAGCTCCGTTCAAGCGGAGAGAAGAAATCTGCTTTCTTTGGCATTGCTCTCAACCAAATGGGTCTCG CCTGTGCGCAGCGCAATGCTATAAATGAGGCTGCAGAATTGTTTGAGGAAGCCAAGATTGTTCTGGAACAAGAGTGTGGACCTTATCACCCTGACACTCT TGGGGTATATAGCAATCTTGCAGGCACTTATGATGCAACGGGCAGGTTGGACGATGCAATTGAAATCTTAGAGTATGTTGTTGGGATGAGGGAGGAAAAG CTCGGGACAGCGAATCCAGATGTTGTTGATGAGAAAAAAAGGCTGGCCGAGCTGTTGAAAGAAGCCGGCAGAGTTCGGAGCAGAAAAGCCAGGTCACTGG AGAACCTCCTTGATGACAACTCTCATGGCATAAACAGTGATGGCATTTAG
AA sequence Show only first row Show all	>Potri.012G080100.3 pacid=42783116 polypeptide=Potri.012G080100.3.p locus=Potri.012G080100 ID=Potri.012G080100.3.v4.1 annot-version=v4.1 MPGIVMDGIDEEGIVNEMNGNSVPMKDNSVPYKSPRRKSSPHSRRSTGLDPPIDGVSVYGVAVDGVLDTSIEQLYENVCDMQSSDQSPLRHSFGSDGEES RIDSELRHLVGGEMREVEIMEEEEEEEEVDKPELGTHSNSSSKKGSSSGSKKSGNLDKTKSASTKSVSSRTSKKPLDSEASSKLTPKGKCPPEKPPIDKQ NDKNLKKGNVGVRLMKKQRNSSLGGVKLPNGTEDSSESGLDNPDLGQFLLKQARDLISSGDNPQKALELALRASKSFEICANDKPSLELVMCLHVTAAIH CSIGQYSEAIPILEHSIEIPVPEEGQEHALAKFAGYMQLGDTYAILGQLEKSTKCYSTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFDDAQKVCQM ALDIHRDNGSPASLEEAADRRLMGLICETKGDHEDALEHLVLASMAMVANGQEAEVACVDCSIGDAYLSLSRYDEAIFAYQKALTAFKITKGENHPSVAS VFVRLAHLCNRTGKLRDSKSYCENALGIYEKPLLGIPPEEVASGLTDVSAVYESMNELDQAIKLLKKALKIYKDAPGQQSTIAGIEAQMGVMYYMLGDYS ESYNSFKNAISKLRSSGEKKSAFFGIALNQMGLACAQRNAINEAAELFEEAKIVLEQECGPYHPDTLGVYSNLAGTYDATGRLDDAIEILEYVVGMREEK LGTANPDVVDEKKRLAELLKEAGRVRSRKARSLENLLDDNSHGINSDGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.012G080100 [exp]	0	1
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	2.82	0.6944
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.008G134900 [exp]	19.07	0.6583
AT5G17010			Major facilitator superfamily ...		Potri.019G055600 [exp]	24.73	0.6430
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	29.79	0.6590	Pt-RAB1.5
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	30.29	0.6477
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.002G239400 [exp]	45.92	0.6416
AT3G47160			RING/U-box superfamily protein...		Potri.011G050700 [exp]	48.49	0.6374
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	50.59	0.6598	Pt-UBC4.2
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	52.53	0.6002
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	81.06	0.5676

Compare expression of checked genes

Potri.012G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.