Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 448 / 1e-145 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 437 / 2e-140 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 433 / 5e-139 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 417 / 6e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 402 / 7e-127 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 402 / 1e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 389 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 384 / 4e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G40720 384 / 1e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 384 / 2e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 461 / 4e-150 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 461 / 1e-149 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 451 / 4e-145 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 450 / 4e-145 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 443 / 1e-143 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 439 / 4e-141 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 436 / 8e-141 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 426 / 2e-136 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 426 / 1e-135 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008967 [exp] 459 / 6e-149 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 452 / 2e-142 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 441 / 2e-142 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 441 / 5e-142 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 423 / 5e-135 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 419 / 1e-132 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 417 / 5e-132 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 414 / 1e-131 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 407 / 3e-130 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 409 / 1e-129 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.012G080200.1 pacid=42783340 polypeptide=Potri.012G080200.1.p locus=Potri.012G080200 ID=Potri.012G080200.1.v4.1 annot-version=v4.1 ATGGAAATTGTACGGTCACACTGGCTTCCGTTGAATGGTCATTGCTTGAGTCACAAACTTGTGTCAGTTCCGTACAAGGTAACTCTCAGAAATCTTGAAA AGACAACTTTAATTTCTTGTAGCTTACAAAATAATGCTACTTCAATTCGGTTAGCTGAAAACCCATCTGAGAAATCAATTTATTCACGTGGGTTTTTGAC CACGAAGTCTGTTATGGATGTTTCAAAGGTTAATAGGATGATTAAGGAGTGTACAGAAGATGGGTTTTTCGAGGATGCAATTAGAGTGTATCTTGATTTC ATTGAATGTGGTTTTCCAGTTGAGGAGTTCAGGTTCTTTCCTTGTTTGATTAAAGCGTTTGGTGGGCTTTATGATGTTAATAAAGGGAAACAAATTCATG GGCATTTGTTGAAGTTTGGGTTTTTACAAGACATTTTTGTTAAGAATTCTCTTTTGGGTATGTATTGGAAATGTGGGGCTGGTGGGAATGCGGTTGACAT GTTTGAGAGGATGGAGGAGAGAGATTCAGTTTCGTGGAATACAATGATATCTGGGTTTTGTCAATCAGGAGATTATGTGAAATCGTTGGTGATGTTTAGA AGGATGGTTAAGGAATGTGGTGGTTCATATCATAACCGGGTGGCATGTCTTGCTGCTCTTTCATCGTGCGCTTCAATTAAGTGTTTGACTCATGGGCTAG AGATTCATGGGTTCCTTGTGAAAAAAGGGGTGGATTCTGATGAGTTCTTGGTGAGTGCGTTGATTGAAATGTACATGAAATGTGGAGATATAAAGAATGC TGAAAATGTTTTTGAGAGAATTCGGGATAATGAGTTGGTGGGAAGGAATATGGTGGTATGGAATGTGATGATCTTGGGGTATGTTTCAAATGAATGTCTT TCATTGGCTTTGGAATTGTTTGTTGAGATGTTAGAATTAGGGATTAGCCCAGATTCGTCAACTGTAGTGGTTGTTTTAGTTTTGTGCTCCCAGTTGCTGG ATTTAGCTGTTGGAAAGCAAATCCATGGACTCATTCTGGGTCTTGGCCTGGATGATGATGTAAGAGTTGGAACAGCTCTTATGGAGATGTATTTTAAATG TGGTGATCCTGAAACCAGTTTGCAAATATTCAAAAGGTCTCAAAATCATAACTTAGTCATGTGGGGTTCAGTGATGTTGAATTGTGCTCAGAATGGTTAC CCAAATGAAGCATTGGAATTTTTCAGTGAGTTTATGTTGGATTGTGGTTTTCCAGATCCTGTCATTCTTTTGGCTGCACTCCGGGCATGTTCATTCTTAT CTCTTAAGCCTAGAGGGATGGCAATTCATGGATTTGCTATAAAGATGGGGTTTGATTCTGATGTTTTTGTTGGTGGTGCCCTAGTTGATTTCTATGGAAA ATGTGGAGACATGGAGTATGCTCAACAAGTTTTTTATGGATTATCAACCAGAGATCTGGTATCGTGGAATGCGCTAATATCTGGATTTGCTCAAAATAAG TGTGCAGATGAAGCTTTGAAGGCATTTCGTGATATGCAATCTAAACAAATCAAGCCCAATACTGTAACCATGGCATGTATTCTTTCTGTTTGCACTCACT TGTCAGTCATGATCCTTTGTAAGGAGGTTCACTGCTACCTACTACGGCATTGGTTTGAGACCAATGCTCTTGTAAACAACTCTCTAATAAGTGCCTATGC CAAATGCGGGGACATACATAGCTCACGGACTGTGTTTGAAAAATTGCCTGTACGAAATGAAGTCACGTGGAATTCAATCCTACTGGGTTTTGGAATGCAT GGCCGTACTGATGAAATGTTTGCAACATTTGAAAAGATGAAAGAAGCAAACATAAAGCCTGACCATGGAACTTTTACTTCCCTCCTTTCCAGCTGCAGCC ATTCTGGGAAGGTTGACGCGGGATGGAAATATTTCAATAGCATGATGGAAGACTATAACCTTGAACCTCGAGTTGAACAATATACTTGCATGGTTGATCT TCTGGGCCGAGCTGGCAATCTAAATCAGGCATATGATCTGATAATGTCAATGCCTTGTTCCCCAGATGATAGAATATGGGGTTCCCTTCTGGCATCCTGC AAAAATCATGGTAACACAAAGTTGGCAGAAGTTGTGGCAAATCACATATTTGAACTAGATGCTTCAAGTGTTGGTTACCGTGTACTCCTCGCAAATTTGT ATGAAGATTCTGGAAATTTGAATGAAGTTTTTCGAGTTCGAACTGATATTAAACAAATGGGACTGAAAAAGCAGCCTGGATGCAGTTGGATTGAAGTTGA TAACAGCATACATATATTTGTTGCTGGTGATTACTCACATGATCGGTCTGGGGATATCTATGCTACCATAGAAAGTTTATCACTAGAAATGAAAAGAGTG GGGTATGTTCCTCACATTCAAGCAGCAAGCAACAAGTACTGGGCTTGA
AA sequence Show only first row Show all	>Potri.012G080200.1 pacid=42783340 polypeptide=Potri.012G080200.1.p locus=Potri.012G080200 ID=Potri.012G080200.1.v4.1 annot-version=v4.1 MEIVRSHWLPLNGHCLSHKLVSVPYKVTLRNLEKTTLISCSLQNNATSIRLAENPSEKSIYSRGFLTTKSVMDVSKVNRMIKECTEDGFFEDAIRVYLDF IECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFR RMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMVVWNVMILGYVSNECL SLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGY PNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNK CADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMH GRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASC KNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYATIESLSLEMKRV GYVPHIQAASNKYWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	0	1
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Potri.003G083100 [exp]	1.73	0.7439
AT5G53020			Ribonuclease P protein subunit...		Potri.012G016600 [exp]	4.24	0.7254
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.012G013900 [exp]	5.38	0.7577	SDG914
AT3G24150			unknown protein		Potri.006G067100 [exp]	8.60	0.7500
AT3G27870			ATPase E1-E2 type family prote...		Potri.001G349100 [exp]	9.21	0.6999
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	11.22	0.6981
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.001G178200 [exp]	12.00	0.6785
AT5G47020			unknown protein		Potri.003G086200 [exp]	21.49	0.7247
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Potri.013G032100 [exp]	24.39	0.6790
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	26.22	0.6494

Compare expression of checked genes

Potri.012G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.