Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32175 381 / 1e-135 PNAS-3 related (.1) AT2G25355 379 / 7e-135 PNAS-3 related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G075400 [exp] 128 / 2e-37 AT2G25355 106 / 2e-29 PNAS-3 related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002375 [exp] 420 / 6e-151 AT4G32175 348 / 2e-122 PNAS-3 related (.1) Lus10042121 [exp] 418 / 4e-150 AT4G32175 345 / 3e-121 PNAS-3 related (.1) Lus10000238 [exp] 274 / 4e-94 AT4G32175 231 / 8e-78 PNAS-3 related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF15985 [poplar] [flax] KH_6 KH domain
Representative CDS sequence Show only first row Show all	>Potri.012G080300.2 pacid=42783543 polypeptide=Potri.012G080300.2.p locus=Potri.012G080300 ID=Potri.012G080300.2.v4.1 annot-version=v4.1 ATGGAGAGTAAATCCTCTGGTTCGCCGGCAACCTTTATTGATAACTTAGTGGTACCAGGAGATGTGGTTGTTGATCTTTCTAGCATGACTAACCAGACAA TTAAGCTTGGTAGTGGGCTCCGTCAGGACTGTGATGCTATATCTGTAATGAAAGCAGGGAAATTGAGGTTCTCAAAGCCAAATAAATATTGGGTTGAAAC CTCCCAAAAGAGGTATGTACCGTGTGCGGAGGACAGTGTTCTTGGAATTGTTGTAGACTCTAAATCAGATAACTTTCTTATCGACATAAAAGGACCTGCC TTGGCTTTTTTGCCTGTGCTTGCATTTGAAGGAGGGACCAGGAGAAACATACCCAAATTTGAGGCAGGTACCCTGCTCTATGTTCGAGTTGTGAAGGCAA ATCCTGGAATGAATCCTGAGTTGTCATGCACTGATGCCAGTGGGAAGGCAGCAGAATTTGGTGCCCTCAAAGATGGCTACATGTTTGAATGTTCAACTGG TCTATCAAGAATGCTGTTGAGCTCACCAACATGTCCGGTTCTTGAGGCTCTTGGCAAGAAGCTCTCCTTTGAGATAGCAGTCGGCTTAAATGGCCGTGTT TGGGTGAATGCTAATTCTCCATCAATAGTTATTATTGTTGCCAATGCAATCATGAATTCGGAGACTTTAAGTGGAGTGCAGCAGAAAATTATGGCAGAGA AATTGCTGCAGAAAATTCAGAATGATTGA
AA sequence Show only first row Show all	>Potri.012G080300.2 pacid=42783543 polypeptide=Potri.012G080300.2.p locus=Potri.012G080300 ID=Potri.012G080300.2.v4.1 annot-version=v4.1 MESKSSGSPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNKYWVETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPA LAFLPVLAFEGGTRRNIPKFEAGTLLYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEALGKKLSFEIAVGLNGRV WVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQND

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32175			PNAS-3 related (.1)		Potri.012G080300 [exp]	0	1
AT5G40530			S-adenosyl-L-methionine-depend...		Potri.001G344000 [exp]	4.89	0.7290
AT1G71430			unknown protein		Potri.015G035700 [exp]	16.30	0.6149
AT1G25260			Ribosomal protein L10 family p...		Potri.001G460100 [exp]	20.88	0.6350
AT2G37020			Translin family protein (.1.2)		Potri.006G126200 [exp]	21.00	0.6465
AT2G03820			nonsense-mediated mRNA decay N...		Potri.004G121500 [exp]	32.61	0.5965
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	38.18	0.6173
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	41.56	0.6134
AT4G27490			3'-5'-exoribonuclease family p...		Potri.009G010600 [exp]	42.30	0.6058
AT4G11240		TOPP7	Calcineurin-like metallo-phosp...		Potri.001G098600 [exp]	45.89	0.5840	PP1.4
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	57.12	0.5984

Compare expression of checked genes

Potri.012G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.