Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62810 330 / 3e-107 ATPEX14, PED2, PEX14 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G076100 [exp] 662 / 0 AT5G62810 316 / 4e-102 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027672 [exp] 393 / 2e-131 AT5G62810 381 / 3e-127 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039936 [exp] 232 / 1e-72 AT5G62810 208 / 3e-64 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002377 [exp] 223 / 8e-69 AT5G62810 199 / 5e-60 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10042119 [exp] 222 / 1e-66 AT5G62810 191 / 2e-55 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10039935 [exp] 102 / 7e-25 AT5G62810 64 / 2e-12 PEROXISOME DEFECTIVE 2, peroxin 14 (.1) Lus10002378 [exp] 85 / 3e-18 AT5G62810 115 / 2e-29 PEROXISOME DEFECTIVE 2, peroxin 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04695 [poplar] [flax] Pex14_N Pex14 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G080800.6 pacid=42782627 polypeptide=Potri.012G080800.6.p locus=Potri.012G080800 ID=Potri.012G080800.6.v4.1 annot-version=v4.1 ATGGCGACTCAATCATCGGATCCTCCTCCTCCTTCAAACCCTGCCGATCAAAATCCTGGGAATGTACAGCCAACAAATGGGATTCAGCAAGATGCTGAGG TTGAGGCTATCAAGCAAAGTCCTCCATCTGTCTTTGTGAACTCGGAACCAATGCGAGAGGAACAAGTGCAGAATGCTGTAAAGTTTCTTTCGCACCCAAA AGTTAGGGGTTCTCCAGTTATGTATAGAAGATCGTTTCTTGAGAAGAAGGGCCTCACAAAGGAAGAGATAGATGAAGCTTTTCTTCGTGTGCCGGATCCA ACTCCAAGCACACAGGCAACCAGTTTGAATCAAGCAGAGGGGCAGGTGAAATCAACACCAAATGCTCAGCCACTAGCTTCAGCACAAACTCTGCAGCCTG TAGCAGCTGGTCCTACTGCTGTAATTTCTTCAGTAGGGACTTTGACTCGATCTCGGTTTCACTGGTATCATGCTGTTTTTGCCGTAGGACTATTGGCAGT TTCAGGTGCTGGAACAGTTGTGTTAGTTAAGAATACTGTTATTCCCAGGCTGAAGTCTTGGATACGTAAGGTTGTGTTGGAAGAAGAAGATGACAATGTG AAGAAAACTAATTTAAAGCCAAGTTTGGCAGAAGAAGCTGCGGCAGCTGCCAAATCAGCAGCAGCAGCAGCTGTTGATGTTGCAAGAGCGAGCCAGGAAC TATTGAATTCAAAAAATGAAGAGAAGAGATACTTCAAGGAATTTATGAAAATGCTAGATGTGCAAGTACAGGAAATGAAGTCAATGAGTACTGCAATACA TAGATTGGAAGGTCAAACAGATAACCGTGTGAGAAACTCTCTTGCTGATCAAGAAGACTATAGAGCCTTAGTTGCAAATCCAAAGCAAACATATACCAAT GGCAAGACAGAGTTTGATTTGCACTCAGGGGGATCTTCATCGCAGCCTGCATCTGCTGAACCCTCTGCTGCACCACACCCTAAGTCATATATGGAGATCA TGGAGATGGTTCGGAGAGGAGAGAGACCTGGCAATATCAGGGATATCAATGATCAACCACCCAATCCTAGTCAGCAAATTTCAAATCCTCGCATTGCGCC TAGAACTAAGCCATGGGAGGTTGGTCAAGTCCAAAATAACTCAAGCCAGGTGCTTCAGTCTCAAGTGAGCGGAGAAGATTTGAATTCCAAGGTACAAGAC AATGGTATCTATCAGTTTGATGGTGAGAGCACTACACCCTGGTGGCAGCAGAAAAATGCCGGAATTGCAGAGATAGATAATGAAGATGAAGTAAAGGCTG GACGTTATGGTGGACAAAACAACCAGCAACCAGTTAGGCGCACATGGGTCCCTCCCCGGCCACCTCCTGTTGTGATGGCTGAAGCGGCTGAAGCCATCAG ACGACCAAAACAATCAATTCAGAAAGAACAATTGGAAGATGATCGATCTGTGTCTCATCCAACAGACACAGCTGATGAGTTACAAAGGATAACAAAAATA TCAGAATCAGGGGGTGCTGTGGAGATTAATGGTGGGGGGTCAGTGCTGAACTCAAGTGAGATACAGGAGGAGCCAGAACAAATCCATGAAGGGAACTAA
AA sequence Show only first row Show all	>Potri.012G080800.6 pacid=42782627 polypeptide=Potri.012G080800.6.p locus=Potri.012G080800 ID=Potri.012G080800.6.v4.1 annot-version=v4.1 MATQSSDPPPPSNPADQNPGNVQPTNGIQQDAEVEAIKQSPPSVFVNSEPMREEQVQNAVKFLSHPKVRGSPVMYRRSFLEKKGLTKEEIDEAFLRVPDP TPSTQATSLNQAEGQVKSTPNAQPLASAQTLQPVAAGPTAVISSVGTLTRSRFHWYHAVFAVGLLAVSGAGTVVLVKNTVIPRLKSWIRKVVLEEEDDNV KKTNLKPSLAEEAAAAAKSAAAAAVDVARASQELLNSKNEEKRYFKEFMKMLDVQVQEMKSMSTAIHRLEGQTDNRVRNSLADQEDYRALVANPKQTYTN GKTEFDLHSGGSSSQPASAEPSAAPHPKSYMEIMEMVRRGERPGNIRDINDQPPNPSQQISNPRIAPRTKPWEVGQVQNNSSQVLQSQVSGEDLNSKVQD NGIYQFDGESTTPWWQQKNAGIAEIDNEDEVKAGRYGGQNNQQPVRRTWVPPRPPPVVMAEAAEAIRRPKQSIQKEQLEDDRSVSHPTDTADELQRITKI SESGGAVEINGGGSVLNSSEIQEEPEQIHEGN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	0	1
AT3G22430			unknown protein		Potri.008G152900 [exp]	4.12	0.8887
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	4.24	0.8785
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	4.89	0.8652
AT2G30120			unknown protein		Potri.001G281400 [exp]	7.14	0.8742
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.014G167800 [exp]	7.21	0.8723
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	9.74	0.8694
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.009G169300 [exp]	10.39	0.8536
AT3G52220			unknown protein		Potri.008G019100 [exp]	10.95	0.8495
AT3G07870			F-box and associated interacti...		Potri.013G053301 [exp]	11.83	0.8341
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	12.48	0.8474

Compare expression of checked genes

Potri.012G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.