Plant FIBer expression Database

DXR.1 (Potri.012G080900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DXR.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62790 828 / 0 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G076200
[exp]
923 / 0 AT5G62790 812 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002379
[exp]
833 / 0 AT5G62790 791 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
Lus10042118
[exp]
831 / 0 AT5G62790 787 / 0.0 PIGMENT-DEFECTIVE EMBRYO 129, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase
CL0139 GADPH_aa-bio_dh PF08436 DXP_redisom_C 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
CL0063 NADP_Rossmann PF13288 DXPR_C DXP reductoisomerase C-terminal domain
Representative CDS sequence
>Potri.012G080900.3 pacid=42782820 polypeptide=Potri.012G080900.3.p locus=Potri.012G080900 ID=Potri.012G080900.3.v4.1 annot-version=v4.1
ATGGCACTTAATATTCTATCTCCAGCTGAAATCAAGGCCATCTCTTTCTTGGATTCTACTAAATCCAATCGCCTACCTAAGCTTCAAGGTGGGCTTAGTT
TGAAGAGGAAGGATTGTGGGGGGAGAAGAATTCAGTGTTCAGTTCAGAATCAGAATCAGCCACCTCCAGCTTGGCCAGGAAGAGCCTGTCCAGAACCTGG
ACGCAAGACATGGGATGGTCCTAAGCCTATATCAATTGTTGGATCTACTGGTTCCATCGGAACGCAGACTTTGGACATTGTAGCGGAGAATCCAGATAAA
TTCAAAGTTGTGGCACTCGCAGCTGGGTCAAATGTTACTCTTCTTGCAGATCAGGTGAGGACATTCAAACCTCAACTGATTGCTGTTAGAAACGAGTCAT
TAGTTGATGAAATCAAAGAGGCCCTGGCTGATGTTGAGGAAAAGCCCGAGATTATTCCTGGGGAGCAAGGAGTTGTAGAGGTTGCTCGTCATCCAGATGC
TGTCAGTGTAGTTACAGGAATAGTAGGTTGCGCAGGTCTAAAGCCTACGGTTGCTGCAATAGAAGCTGGAAAAGACATATGCTTGGCCAATAAAGAGACA
TTAATTGCTGGGGGTCCTTTTGTTCTCCCTCTTGCTCACAAATATAACGTGAAAATTCTTCCAGCTGATTCTGAACATTCTGCCATTTTTCAGTGTATTC
AAGGCCTGCCGGAGGGTGCATTGCGGCGCATCATTTTAACTGCTTCTGGTGGGGCTTTCAGGGATTGGCCTGTTGAGAAATTGAAAGAAGTTAAAGTAGC
TGATGCTTTGAAGCATCCCAACTGGAATATGGGTAAAAAGATTACTGTAGACTCTGCTACCCTTTTCAACAAGGGTTTAGAAGTCATTGAAGCCCACTAT
TTGTTCGGAGCTGATTATGATAATATTGATATCGTAATTCATCCACAGTCTATAATACATTCAATGATTGAAACACAGGACTCATCTGTTCTCGCACAGT
TGGGGTGGCCTGATATGCGCTTGCCTATCCTTTACACAATGTCATGGCCAGACAGAGTTTACTGTTCTGAAATTACTTGGCCTCGCCTAGATCTTTGCAA
GCTTGGATCACTAACTTTTAAAGCTCCTGACAATGTAAAATACCCATCTATGGATCTTGCTTATGCTGCTGGACGAGCTGGAGGCACCATGACAGGAGTC
CTCAGTGCTGCTAATGAGAAAGCTGTAGAAATGTTCATAGATGAAAAGATAAGCTATCTTGACATTTTCAAGGTTGTGGAGCTAACATGTGATAAGCACC
AGGCAGAATTAGTGGTCTCACCCTCTCTTGAGGAAATTATACATTATGACTTGTGGGCTCGAGAATATGCTGCTAACCTGCAACACTCTTCTGGTCCAAG
TCCTGTTTTTGCTTGA
AA sequence
>Potri.012G080900.3 pacid=42782820 polypeptide=Potri.012G080900.3.p locus=Potri.012G080900 ID=Potri.012G080900.3.v4.1 annot-version=v4.1
MALNILSPAEIKAISFLDSTKSNRLPKLQGGLSLKRKDCGGRRIQCSVQNQNQPPPAWPGRACPEPGRKTWDGPKPISIVGSTGSIGTQTLDIVAENPDK
FKVVALAAGSNVTLLADQVRTFKPQLIAVRNESLVDEIKEALADVEEKPEIIPGEQGVVEVARHPDAVSVVTGIVGCAGLKPTVAAIEAGKDICLANKET
LIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHY
LFGADYDNIDIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPDRVYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGV
LSAANEKAVEMFIDEKISYLDIFKVVELTCDKHQAELVVSPSLEEIIHYDLWAREYAANLQHSSGPSPVFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
0 1 DXR.1
AT2G03390 uvrB/uvrC motif-containing pro... Potri.010G161600
[exp]
3.16 0.9570
AT3G10405 unknown protein Potri.008G034900
[exp]
4.69 0.9573
AT5G63860 UVR8 UVB-RESISTANCE 8, Regulator of... Potri.007G100200
[exp]
4.89 0.9262
AT1G62780 unknown protein Potri.001G119100
[exp]
8.00 0.9551
AT5G67385 Phototropic-responsive NPH3 fa... Potri.007G053200
[exp]
8.00 0.9110
AT2G27680 NAD(P)-linked oxidoreductase s... Potri.009G146000
[exp]
10.39 0.9563
AT3G21580 ABCI12 ATP-binding cassette I12, coba... Potri.008G199900
[exp]
10.95 0.9122
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Potri.018G040200
[exp]
11.04 0.8962
AT3G46100 ATHRS1 Histidyl-tRNA synthetase 1 (.1... Potri.006G124400
[exp]
12.12 0.9405
AT5G27560 Domain of unknown function (DU... Potri.013G020800
[exp]
14.42 0.9326

Potri.012G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.