Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62940 194 / 3e-59 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 125 / 3e-34 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G24060 125 / 3e-33 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 122 / 5e-33 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 121 / 3e-32 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 119 / 2e-31 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G07640 117 / 6e-31 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G37590 117 / 2e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT1G51700 113 / 3e-30 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G55370 116 / 4e-30 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077100 [exp] 541 / 0 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 140 / 2e-39 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 137 / 1e-38 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 135 / 2e-37 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.002G174300 [exp] 134 / 2e-37 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 132 / 8e-37 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 131 / 2e-36 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G048300 [exp] 129 / 4e-35 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 127 / 3e-34 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002381 [exp] 184 / 1e-55 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 154 / 7e-47 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10017882 [exp] 125 / 6e-34 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10034652 [exp] 125 / 7e-34 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10014002 [exp] 115 / 9e-31 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 118 / 2e-30 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 118 / 2e-30 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10015425 [exp] 115 / 3e-30 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10012619 [exp] 117 / 5e-30 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10010113 [exp] 116 / 6e-30 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.012G081300.1 pacid=42782514 polypeptide=Potri.012G081300.1.p locus=Potri.012G081300 ID=Potri.012G081300.1.v4.1 annot-version=v4.1 ATGGGTCTTACTTCACTGCAAGTTTGCATGGATTCAAGTGATTGGCTGCAGGGCACGATTAACGATGAGTCTGGAATGGATTCTTCTTCACCATCTGGGG ATATGCTCACTTGTTCAAGGCCCTTGATAGAGAGGAGGCTTAGGCCCCCACATGACCAAGCTCTCAAATGCCCTAGGTGTGACTCAACACACACCAAATT TTGTTACTACAACAACTACAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACTTGCAGGAGGTACTGGACCAAAGGAGGCACCCTGAGGAACATCCCTGTG GGTGGTGGATGTAGAAAGAACAAGAAAGTGTCTAAGAAATCAAATGATCAATCAGTTAACCAAATTAACCCTGGATCATCATCCTCCCACAATCCTACTG ATCTTCACCTTTCATTTCCTGAGGTGCAACTTTCACACTTAAATAGCATACTTGGTTCACAAGGAACAATTGCAACCTCTAACTTCATGGATAGCAAGTA CAATATCGGTATGCTAGAAAACCCAAGGCCTATAGATTTTATGGATAGTAAGTTAGAAGCTTTAGTGGGAAGCTCTAGGAATTATGATTTCATGGGGAAT GGTGACTTGGGTATGGTTAGTGGGCTCGGAGATACGAGTCATCATCATGGGTTAGCACCAAATTTTAGTGATATTTGCTCTTCATTTGGGATGTCCCTTG ATGGAAACAGTGGCACTTTCATGGAAACTTGCCAAAGGTTAATGCTTCCTTATGGCCAAGGAAATAATGATCAGAATGCAATTGATGTGAAGCCAAACAC CAAGCTCTTGTCCCTTGACTGGCAAGACCAGGGTTGCTCTGATGGTGGGAAGGACACATTTGGATACCTAAACAATTTAGGATCATGGACAGGCATGATG AATGGTTATGGATCATCCACGACCAATACTTTAGTGTAA
AA sequence Show only first row Show all	>Potri.012G081300.1 pacid=42782514 polypeptide=Potri.012G081300.1.p locus=Potri.012G081300 ID=Potri.012G081300.1.v4.1 annot-version=v4.1 MGLTSLQVCMDSSDWLQGTINDESGMDSSSPSGDMLTCSRPLIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPV GGGCRKNKKVSKKSNDQSVNQINPGSSSSHNPTDLHLSFPEVQLSHLNSILGSQGTIATSNFMDSKYNIGMLENPRPIDFMDSKLEALVGSSRNYDFMGN GDLGMVSGLGDTSHHHGLAPNFSDICSSFGMSLDGNSGTFMETCQRLMLPYGQGNNDQNAIDVKPNTKLLSLDWQDQGCSDGGKDTFGYLNNLGSWTGMM NGYGSSTTNTLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	0	1
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	1.73	0.9542
AT4G31980			unknown protein		Potri.013G146600 [exp]	2.82	0.9497
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	3.16	0.9532
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	3.74	0.9466
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	6.24	0.9113
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	6.48	0.9509
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	7.93	0.9321
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	8.24	0.9338
AT2G27300	NAC	NTL8, ANAC040	Arabidopsis NAC domain contain...		Potri.009G161300 [exp]	8.94	0.9433
AT2G01080			Late embryogenesis abundant (L...		Potri.001G163800 [exp]	9.79	0.9460

Compare expression of checked genes

Potri.012G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.