Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48190 136 / 6e-32 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40340 121 / 1e-27 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 110 / 2e-24 Tudor/PWWP/MBT superfamily protein (.1) AT5G02950 107 / 1e-23 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 104 / 1e-22 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G27650 79 / 1e-14 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 72 / 1e-12 Tudor/PWWP/MBT superfamily protein (.1) AT3G54760 46 / 0.0002 dentin sialophosphoprotein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130600 [exp] 169 / 1e-42 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 117 / 2e-26 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 116 / 6e-26 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.006G131800 [exp] 92 / 2e-18 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.005G026800 [exp] 91 / 3e-18 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.016G085500 [exp] 90 / 5e-18 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.013G018700 [exp] 79 / 2e-14 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.014G138700 [exp] 47 / 8e-05 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002382 [exp] 174 / 6e-44 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 173 / 1e-43 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10014546 [exp] 144 / 2e-34 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 142 / 6e-34 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 104 / 3e-22 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10040367 [exp] 104 / 4e-22 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10012010 [exp] 96 / 8e-20 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10016267 [exp] 95 / 2e-19 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10031498 [exp] 86 / 1e-16 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 86 / 1e-16 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.012G081500.1 pacid=42782781 polypeptide=Potri.012G081500.1.p locus=Potri.012G081500 ID=Potri.012G081500.1.v4.1 annot-version=v4.1 ATGGAAAACCCTAAAACCCCAGAAGCTCAAAAACCAGATGAAAAAAATCTAGGAGGACCTTCTTGGCCTTCTGGGCTGTTTGATGTTGTTGAAGGAAAGA TTTCCGGTGGCGATGAATATGCAACGCTTGATGTTGCAGCGAGTGGTATTAATGTTGTTGGAAATGAAGAGGGTTATTTGGTGAATGATGGTATTGTTAA GGCTGTTGAGGAGGGAAAGGGTCATGTGGACACGGCATTGGGTGAAGCTTTAGTGGATTTGGGGGTTGCTGTGAGGGAGGAAGTTGCTGTTGAGGATACT GTGAGAGACAAAGAATTGAAGGAAGATGGAGTTGTTGTTGAAGATACTTTGAGAGATGAGGAGCTGAAGGAAGATGGAGTTGTTGTTGAGGATACGGTTA GAGATGAGGAACTGAAGAAAGATGGAGTTGTTGATAAGAATATTGTGAGAGATGAGGAATTGAAGGAAGATGAGCTCTTGGGATTTAATGCTGTCGATTC TGCTCGGAAGATTGATGTTTCGGGAGACAATCTATCAATTTATGTTGATCTTTCTGGTTCTCTGACTGGAGTTGATTTTGATGTTGTGAATTGCCCTGGG GTTGTGGTGAGTGAGGAGTCTAAAGAAGCTGATGACGAGAAGGAAGAGTTAAATGGTAAGTTTCACGTCGGTGATATTGTCTGGGTTAAAACCAAAAATC AGTCTTGGTGGCCTGGAAAAATTTTTGATCCATTAGGTGTGACAAAGTATGCTGTCCAGAGTGACCAGAGGAACGGCTTATTGGTTGGGTACTTGGGGAG TTGCCACATTGCTTGGTGCTTGCCATCTCAGTTGAAGCCTTTCCATAAGGATTTTGAACAGATGGTGGTAAAGAATAAGGCTAGAAGCTTCCTTGGAGCA GTGGAGAAGGCTGTGGATGAATTTGGTAGGTGCCTCAAATCAGAGATGACTTGTTCTTGTATTCTCAAAGAAGGTTGGCAGTCAGCCGGCAATGATGGAT TTCAGGACGGATTTTCCATTCTAGAGTGCAGATTTGGTGACTATTCAATCACTCAGTTTGAACCAGAGAAACTTCTTGCACAAATTAAAGATCTTGCGCT GGCTGTTTCCAAGCTCAGCGTACTTGAGTTAACTGTTGCAAAGAATCGTTTGTCAGCATTTTATCAATCCATAGGACATCAACAATTACCTACGAATCAA CTCTGGGATACAACTCCTGATGAAGACGGCAGTGACAGGTGTGTGGCAAAAGGCAATTCCAAGGTCTATGGTGCACACGCAAATTCAACACCATCTGGAG GGAAATTGCAGAGCACAGAGGATGAAGGTCTACGACAAATGAAAAATGAAGACCTGGCTGTGATTTTTGGAAGGGACCTGGACATGTCCGAGAATTGCAG AAGCAAAGCTCCTCAAGAAAATTTTGTCTCTAATGATATGGCATCAAATTCCAGGAAGAGAAAGAGAAAGTATTCTGAACTCAAAGTGGAAGGTCCTGAT GTCGATCCATTTTCTTCTCCGATTATGGAGGAGAAACACCACTCGGGCTCTTCTTTAACAGTAGAGAAGAGCTCGGAGTTGAGAGAAAGAAAGAAGAGCA AGTATTTGTCATATCCCTATGTGAACTGGGAAGCTAAAGGCTTGCCTGGTCCATTAGAAGACCAAGGGCCTCAGGAAGTTTCTCAAGAGGACGAGGATGT GAACCCAGTAGCTGGTCAGTTTATTGGGTCCCATTCAGTTTCGAAGTCTAGTGGCAAGAGGTTCCAGAAGAAATGGATCAGAAAATTCATAAGTGGGAAT GATACATCCAAGAACCCAGAGTTGATCAATGCATCTGCTGCTGATTTGCTCTCTGAACTCTGTTTTACAGCTGTGGATTGTCTGTACCCGAATGAGAGTA AGAACTTCGATTTAGCTGAGTGGTTCTTTTCAAGGTTCAGAATATCAGTGTATCACGACGAATCCATTTATGAAAAGTATTGTAAGGATGTGATTGGGAG AAATAATGATGCGTCACTGGGAAAGGATGCCCAGGAGACGAATCAGACTCAAACACTGCCAAATGCCAAGGCCCAGAGCGAAAAGAACTCTAGAAACTCA GCTAGATCAAAAGTTAAATCTCTTTCTGGCTTGTCAGATGTAAACATAAACATAACCGCAGGTGCTGTATTCTTGAATTCTCCCCATGAGATGGCCCATC CCACACCTAATGGAAAACCCAAGCCTAAGAAAGCACAAACGAAGCAAGGAGCAATCCCAGCAGGGCAGCAGATCAACCACCCGACTAGCATACCAGACTT GAACAGCAATGGTACCATGCCGAATTTTTTGGTAGAAAATTTACAAATTGTGGGCCATGTTGCTTCTGAAGATAAACCCAAGCCAAACAAAAGGAAAAAG AAAGTAGGCTTAGTTGAAGACAATGGTAGTACTACTGAACCTGGCACCATGTTAGTGGATTTGCAGGTGACGGGCCCATTTTCAATAAATGCTATTACTG ATGAAAGTAACAGGGAGGGGGTTACTGCTAGCGTAAAAGATTTGTATGGAAACAGTACTATTCCAGTCATATTGCCACACTCAGCTGAAGGTAAGCCTGT GCCAAAAAAAAGAAAGAGAAAGGAGGAATCAACTTCTGAGCAGAGCATCCTTGCTGCTGGCATACCAGATTTAAATGGGACTACTGCTGAATCAGGTGCC TTGGCCAAATCTGAGAAGAAGAGAAGAAGAAAAGGAGAAGGTATTGTGGGGCGACCAAGAAAGAAAACCACTGCTGGAAACATGGAATACTATAAAGCAG AGACCAATGGGGAAGCTCCAGCAACTGCTCTTCTCTTGACATTTGCTCCAGGATACTCCATGCCATCGAAAGAAATTCTGGTTGCAACATTTTGCAGGTT TGGTCCCTTGAAGAAATCGCAGACGCAGGTGATGAAGGATTCTTCTACTGCACAGGTTGTTTTCATGAAGAGCACTGATGCAGTTGAAGCAGCTAGGAGT TTAGAGAAGGCTAATCCTTTTGGTGCAACCCTCGTCAATTACGATCTTCATCTAATTCCAGCTGCTTCATCCTCTCAGTGCACCAAGGGATTTGGGACCC CTGTGAAGACGTCTGGGTCAATGCCAAAGCTTGCTGAGGCACCGCCCATTGACTTCATAAGGCAGAATCTAGAAATGATGACATCGATGCTGGAGAAGTC AGGAGATAATCTTTCTCCTGAGATGAGAGCCAAATTAGAGATTGAGATTAAAGGCCTCCTGAAAAAAGTGAGCTCATTGCCTAGTTCTTCCTCTTAA
AA sequence Show only first row Show all	>Potri.012G081500.1 pacid=42782781 polypeptide=Potri.012G081500.1.p locus=Potri.012G081500 ID=Potri.012G081500.1.v4.1 annot-version=v4.1 MENPKTPEAQKPDEKNLGGPSWPSGLFDVVEGKISGGDEYATLDVAASGINVVGNEEGYLVNDGIVKAVEEGKGHVDTALGEALVDLGVAVREEVAVEDT VRDKELKEDGVVVEDTLRDEELKEDGVVVEDTVRDEELKKDGVVDKNIVRDEELKEDELLGFNAVDSARKIDVSGDNLSIYVDLSGSLTGVDFDVVNCPG VVVSEESKEADDEKEELNGKFHVGDIVWVKTKNQSWWPGKIFDPLGVTKYAVQSDQRNGLLVGYLGSCHIAWCLPSQLKPFHKDFEQMVVKNKARSFLGA VEKAVDEFGRCLKSEMTCSCILKEGWQSAGNDGFQDGFSILECRFGDYSITQFEPEKLLAQIKDLALAVSKLSVLELTVAKNRLSAFYQSIGHQQLPTNQ LWDTTPDEDGSDRCVAKGNSKVYGAHANSTPSGGKLQSTEDEGLRQMKNEDLAVIFGRDLDMSENCRSKAPQENFVSNDMASNSRKRKRKYSELKVEGPD VDPFSSPIMEEKHHSGSSLTVEKSSELRERKKSKYLSYPYVNWEAKGLPGPLEDQGPQEVSQEDEDVNPVAGQFIGSHSVSKSSGKRFQKKWIRKFISGN DTSKNPELINASAADLLSELCFTAVDCLYPNESKNFDLAEWFFSRFRISVYHDESIYEKYCKDVIGRNNDASLGKDAQETNQTQTLPNAKAQSEKNSRNS ARSKVKSLSGLSDVNINITAGAVFLNSPHEMAHPTPNGKPKPKKAQTKQGAIPAGQQINHPTSIPDLNSNGTMPNFLVENLQIVGHVASEDKPKPNKRKK KVGLVEDNGSTTEPGTMLVDLQVTGPFSINAITDESNREGVTASVKDLYGNSTIPVILPHSAEGKPVPKKRKRKEESTSEQSILAAGIPDLNGTTAESGA LAKSEKKRRRKGEGIVGRPRKKTTAGNMEYYKAETNGEAPATALLLTFAPGYSMPSKEILVATFCRFGPLKKSQTQVMKDSSTAQVVFMKSTDAVEAARS LEKANPFGATLVNYDLHLIPAASSSQCTKGFGTPVKTSGSMPKLAEAPPIDFIRQNLEMMTSMLEKSGDNLSPEMRAKLEIEIKGLLKKVSSLPSSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	0	1
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.008G079300 [exp]	2.23	0.7671
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	2.82	0.7657
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	3.00	0.7593
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	4.24	0.7487
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	10.24	0.7501
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.016G003800 [exp]	13.78	0.7012
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	16.49	0.7042	RDR904
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.006G003000 [exp]	18.65	0.7526
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	18.89	0.7014
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	21.16	0.7464

Compare expression of checked genes

Potri.012G081500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.