Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32180 1486 / 0 ATPANK2 pantothenate kinase 2 (.1.2.3) AT1G60440 396 / 5e-130 ATCOAA, ATPANK1 pantothenate kinase 1 (.1) AT4G35360 209 / 8e-60 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 204 / 3e-58 Uncharacterised conserved protein (UCP030210) (.1) AT2G17320 204 / 3e-58 Uncharacterised conserved protein (UCP030210) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077300 [exp] 1716 / 0 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.010G041800 [exp] 499 / 2e-169 AT4G32180 516 / 2e-178 pantothenate kinase 2 (.1.2.3) Potri.008G189500 [exp] 484 / 2e-163 AT4G32180 504 / 7e-174 pantothenate kinase 2 (.1.2.3) Potri.009G169000 [exp] 199 / 1e-56 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.004G207700 [exp] 196 / 2e-55 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009520 [exp] 1550 / 0 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 1368 / 0 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10029146 [exp] 469 / 1e-157 AT4G32180 500 / 7e-172 pantothenate kinase 2 (.1.2.3) Lus10013019 [exp] 468 / 3e-157 AT4G32180 503 / 3e-173 pantothenate kinase 2 (.1.2.3) Lus10013846 [exp] 192 / 1e-53 AT4G35360 619 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10026563 [exp] 173 / 6e-47 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [poplar] [flax] DUF89 Protein of unknown function DUF89 CL0108 [poplar] [flax] Actin_ATPase PF03630 [poplar] [flax] Fumble Fumble
Representative CDS sequence Show only first row Show all	>Potri.012G081600.2 pacid=42783600 polypeptide=Potri.012G081600.2.p locus=Potri.012G081600 ID=Potri.012G081600.2.v4.1 annot-version=v4.1 ATGGCAAGTTTAAAAGAGGACCCAATTCTTGGAATTGACGGTATAATTATAAAGGAGGAGTTTGAGATTGCCAAGCCTGTGATTGACAAGCTGAGGGAGG ACCGCCCAGCTCTTGAAACTGAAGGCACAGTAATAAAAGGGGAGTCTGTGATTGACAAGGTAATAGAGGAGGGGAGCGGTGGTCAAGGTGAGAGAGACAT GGTTCCTCCCACTAGCACTTCTATCCACAGGTCTGGTTCCAGACCACAGCTGGACCTTAGCAAGGCTGCAATTGAAGGGAATTTTGAGGAGAGGGATCCT ACAATTCTGTTGCCTAATCAATCTGATGATATATCCCATTTGGCTCTTGATATTGGAGGTTCTCTAATCAAGTTGGTGTATTTTTCAAGACACCAAGACC GGCCAACTAATGATAAGAGGAAGAAGACAGTGAAGGAGAGATTGGGAATTTCCAATGGTAATAGGAGAAGCTACCCCATTCTTGGAGGAAGACTTCATTT TGTTAAGTTTGAGACAAGCAAGATCAATGAGTGCTTGGACTTTATTTCTTCCAAGCAGCTTCATCGTGGTGGAGTGGATTCACATAGCTGGCATTCTGAT ACCTCATCCAATGGCAATGCTGTAATTAAGGCCACAGGTGGCGGGGCATACAAGTATGCAGACCTCTTAAAGGAAAGGCTTGGGGTTAGTCTTGACAAAG AAGATGAAATGGATTGTCTTGTGGCAGGAGCGAACTTTTTGCTTAAGGCTATTCGCCATGAAGCTTTCACACACATGGAGGGTCAGAAAGAGTTTGTGCA GATTGATCAGAATGATATGTTCCCTTATCTTCTCGTTAACATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGGAAGTTTGAACGAGTCAGT GGGACAAATGTTGGTGGTGGTACTTACTGGGGCTTGGGAAGGCTGTTAACCAAGTGCAAGAGTTTTGATGAGTTGCTAGAGCTGAGTCAAAAGGGTGATA ATGGAACAATTGACATGCTGGTTGGTGATATTTATGGTGGTATGGATTATAACAAGATTGGTCTGTCAGCATCAACCATCGCTTCTAGTTTTGGCAAGGC TATCTCTGAAAAGAAGGAACTTACAAACTACAGACCTGAAGATATTTCCCTGTCCCTCTTGCGAATGATTTCATATAACATTGGGCAGATTTCATACCTG AATGCACTTCGATTTGGGCTTAAGAGAATCTTCTTTGGAGGGTTTTTCATTAGGGGTCATGCATATACAATGGATACAATTTCCTTTGCTGTTCACTTCT GGTCAAAAGGAGAGGCACAAGCAATGTTTTTGCGGCATGAAGGATTTCTGGGAGCTTTAGGTGCATTTATGAGCTATGAAAAGCATGGTCTTGATGACTT GATGGTTCATCAGTTAGTTGAAAGGTTCCCTATGGGTGCACCATATACTGGAGGAAAGATTCACGGTCCACCACTCGGGGATTTGAATGAGAAGATTTCA TGGATGGAAAAGTTTGTGCAGAAGGGAACTGAGATTACTGCTCCTGTACCAATGGCTTCATCTGGAACCACTGGGCTTGGTGGCTTTGAAGTTCCTTCAT CCAAAGGTGGTACTCTACGTTCTGATGCCAGTGCATTAAATGTTGGTGTTCTGCATCTTGTACCCACACTGGAGGTGTTTCCACAATTGGCAGACCCAAA AATGTATGAGCCTAACACTATCGACCTCGCAGATCACAGTGAATTAGAGTACTGGTTCACTGTGCTGTCTGACCATTTGCCAGATCTTGTTGATAAGGCA GTGGCTAGTGAAGGTGGAACGGATGATTCTAAAAGAAGAGGTGATGCTTTCGCTCATGCATTTTCTGCTCACTTGGCAAGGTTGATGGAGGAGCCTGCAG CATATGGGAAGTTAGGATTGGCCAATCTCTTGGAACTAAGGGAAGAGTGCTTGAGAGAATTCCAATTTGTGGACGCATATAGAAGCATAAAACAGAGAGA AAATGAGGCATCACTCGCTGTGTTACCTGACCTGTTGGTGGAGCTTGATAGCATGACAGAGGAGACACGATTGCTTACATTAATTGAGGGTGTTCTAGCT GCGAACATATTTGACTGGGGATCTCGTGCTTGTGTGGAACTCTATCACAAAGGAACAATCATAGAAATCTATAGAATGAGTCGCAATAAAATGCAAAGAC CTTGGCGGGTGGATGACTTTGATGCATTCAAAGAAAGAATGTTGGGGTCTGGAGATAAGAAGCCTTGCCCTCATAAGCGAGCTTTACTTTTTGTGGACAA CTCAGGTGCTGATGTTATTTTAGGGATGCTTCCCCTAGCACGGGAACTCCTCCGTCATGGAACTGAGGTTGTTTTGGTTGCAAACTCCCTTCCAGCACTA AATGATGTAACAGCTATGGAGCTTCCTGACATTGTCGCTGAGGCTGCAAAGCATTGTGACATTCTTCGCAGAGCTGCTGAAGCAGGTGGCCTACTTGTTG ATGCAATGATAAACACTTCAGATGGTTCTAAAGATAATTCCTCCTCAGTTCCCTTGATGGTTGTTGAGAATGGGTGTGGGAGTCCGTGCATTGATTTGAG GCAGGTCAGCTCTGAGCTTGCTGCCGCTGCAAAGGATGCTGATTTGATTGTATTGGAAGGGATGGGTAGAGCTCTTCACACGAATTTCAATGCTCGGTTT AAATGTGAGGCTTTGAAGCTTGCAATGGTGAAGAATCAGAGGCTGGCAGAAAAATTGATCGAAGGAAATTTATACGACTGTGTCTGCAGATATGAACCAG CCAGTTGA
AA sequence Show only first row Show all	>Potri.012G081600.2 pacid=42783600 polypeptide=Potri.012G081600.2.p locus=Potri.012G081600 ID=Potri.012G081600.2.v4.1 annot-version=v4.1 MASLKEDPILGIDGIIIKEEFEIAKPVIDKLREDRPALETEGTVIKGESVIDKVIEEGSGGQGERDMVPPTSTSIHRSGSRPQLDLSKAAIEGNFEERDP TILLPNQSDDISHLALDIGGSLIKLVYFSRHQDRPTNDKRKKTVKERLGISNGNRRSYPILGGRLHFVKFETSKINECLDFISSKQLHRGGVDSHSWHSD TSSNGNAVIKATGGGAYKYADLLKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDQNDMFPYLLVNIGSGVSMIKVDGDGKFERVS GTNVGGGTYWGLGRLLTKCKSFDELLELSQKGDNGTIDMLVGDIYGGMDYNKIGLSASTIASSFGKAISEKKELTNYRPEDISLSLLRMISYNIGQISYL NALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLGDLNEKIS WMEKFVQKGTEITAPVPMASSGTTGLGGFEVPSSKGGTLRSDASALNVGVLHLVPTLEVFPQLADPKMYEPNTIDLADHSELEYWFTVLSDHLPDLVDKA VASEGGTDDSKRRGDAFAHAFSAHLARLMEEPAAYGKLGLANLLELREECLREFQFVDAYRSIKQRENEASLAVLPDLLVELDSMTEETRLLTLIEGVLA ANIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGDKKPCPHKRALLFVDNSGADVILGMLPLARELLRHGTEVVLVANSLPAL NDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMINTSDGSKDNSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLIVLEGMGRALHTNFNARF KCEALKLAMVKNQRLAEKLIEGNLYDCVCRYEPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.012G081600 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	5.56	0.8488	TGA3.1
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.015G084000 [exp]	6.00	0.8406
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G029700 [exp]	6.32	0.8334	APP1.2
AT4G28070			AFG1-like ATPase family protei...		Potri.018G100900 [exp]	7.21	0.8103
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Potri.008G219000 [exp]	8.48	0.8183
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Potri.007G116100 [exp]	12.00	0.8377
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	15.49	0.8390
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	17.14	0.8005
AT2G30620			winged-helix DNA-binding trans...		Potri.013G042700 [exp]	17.43	0.8063	HON902
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.010G157900 [exp]	19.36	0.7946

Compare expression of checked genes

Potri.012G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.