Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22220 253 / 2e-87 ATISU1, ISU1 SufE/NifU family protein (.1) AT4G04080 227 / 3e-77 ISU3, ATISU3 ISCU-like 3 (.1) AT3G01020 216 / 5e-73 ISU2, ATISU2 ISCU-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077500 [exp] 305 / 3e-108 AT4G22220 248 / 3e-85 SufE/NifU family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042112 [exp] 246 / 1e-84 AT4G22220 261 / 3e-90 SufE/NifU family protein (.1) Lus10002383 [exp] 245 / 5e-84 AT4G22220 260 / 5e-90 SufE/NifU family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0233 [poplar] [flax] SufE_NifU PF01592 [poplar] [flax] NifU_N NifU-like N terminal domain
Representative CDS sequence Show only first row Show all	>Potri.012G081700.3 pacid=42782659 polypeptide=Potri.012G081700.3.p locus=Potri.012G081700 ID=Potri.012G081700.3.v4.1 annot-version=v4.1 ATGTTGAGACAACTGGCGTCCAAGAGATTGTTCTCCCAAAGAACTCAGATCCTGCCACGCTTCTATCACGAGAAGGTGATTGATCACTTCAACAATCCTC GCAACGTTGGTTCTTTTGACAAGACAGATCCGACGGTGGGTACTGGGCTTGTCGGCGCACCTGCCTGTGGTGATGTGATGAAGCTGCAGATTAAGGTGGA TGATACAACTGGTGAGATTATAGATGCTCGATTCAAAACCTTCGGTTGTGGCTCCGCTATTGCTTCCTCCTCTGTTGCTACTGAATGGGTGAAAGGGAAA CAAATGGAGGAAGTTATGACCATCAAGAACACGGAGATCGCAAAACATCTTTCTCTTCCACCAGTTAAGCTGCACTGCAGCATGCTTGCTGAGGATGCCA TCAAGGCCGCTGTGAAGGATTATCAAACCAAGCGTGCAAAATCAAATGTTGATTCAGAAGCGGAACCTGCTGTGCAGGCTGCTAAAGCTTGA
AA sequence Show only first row Show all	>Potri.012G081700.3 pacid=42782659 polypeptide=Potri.012G081700.3.p locus=Potri.012G081700 ID=Potri.012G081700.3.v4.1 annot-version=v4.1 MLRQLASKRLFSQRTQILPRFYHEKVIDHFNNPRNVGSFDKTDPTVGTGLVGAPACGDVMKLQIKVDDTTGEIIDARFKTFGCGSAIASSSVATEWVKGK QMEEVMTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQTKRAKSNVDSEAEPAVQAAKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.012G081700 [exp]	0	1
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	3.00	0.9340	ELIP2.1,Elip4
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	4.00	0.9308	Elip1,Pt-ELIP2.2
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	6.24	0.9285
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	8.06	0.9238
AT3G62270			HCO3- transporter family (.1)		Potri.012G081800 [exp]	9.38	0.8846
					Potri.012G031150 [exp]	9.53	0.8973
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155400 [exp]	9.79	0.9034
AT4G27130			Translation initiation factor ...		Potri.007G122700 [exp]	10.77	0.8259
AT2G32040			Major facilitator superfamily ...		Potri.010G085900 [exp]	12.24	0.8632
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	12.64	0.8919

Compare expression of checked genes

Potri.012G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.