Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27510 44 / 7e-05 Protein of unknown function (DUF3506) (.1) AT1G06110 42 / 0.0003 SKIP16 SKP1/ASK-interacting protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078100 [exp] 479 / 4e-173 AT1G06110 48 / 3e-06 SKP1/ASK-interacting protein 16 (.1) Potri.017G027000 [exp] 59 / 7e-10 AT1G06110 545 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.007G130900 [exp] 52 / 2e-07 AT1G06110 557 / 0.0 SKP1/ASK-interacting protein 16 (.1) Potri.015G075000 [exp] 41 / 0.0007 AT1G27510 582 / 0.0 Protein of unknown function (DUF3506) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027693 [exp] 375 / 2e-131 AT1G06110 49 / 2e-06 SKP1/ASK-interacting protein 16 (.1) Lus10039964 [exp] 380 / 1e-130 AT5G62960 247 / 7e-78 unknown protein Lus10004805 [exp] 49 / 2e-06 AT1G06110 542 / 0.0 SKP1/ASK-interacting protein 16 (.1) Lus10020435 [exp] 45 / 4e-05 AT4G33630 655 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10007064 [exp] 45 / 4e-05 AT4G33630 667 / 0.0 EXECUTER1, Protein of unknown function (DUF3506) (.1), Protein of unknown function (DUF3506) (.2) Lus10027696 [exp] 42 / 0.0005 AT1G27510 635 / 0.0 Protein of unknown function (DUF3506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [poplar] [flax] AAA_lid PF02151 [poplar] [flax] UVR UvrB/uvrC motif CL0159 [poplar] [flax] E-set PF04379 [poplar] [flax] DUF525 ApaG domain
Representative CDS sequence Show only first row Show all	>Potri.012G082300.2 pacid=42784370 polypeptide=Potri.012G082300.2.p locus=Potri.012G082300 ID=Potri.012G082300.2.v4.1 annot-version=v4.1 ATGCAGTCCCTCAATCTGAGACTGTCGACGGATTTTAGTACGGGTACGAGGAGGTTTGTTCCAGGTCGGAGCTTCGGAGAGGAGAGGAGACAGTGTTTGA GTTTCAGAGTTTCCTACAGAAATTGTCGGATTGTTGCATGTTCTGTTGAGAGAGATGGAAACGGTGAAGGAACAAGTTCCAGTTCGGGTTCTGATCATAG TCCGAGTTCGTTTTTGTCTCGGAGTCAAACGTATGCTATGCTAAAACAACAAATGGAGGTTGCTGCGCAATCTGAGGATTATGAAGAAGCTGCGAGAATT CGTGATTCGTTGAAATCATTTGAGGAAGAGGAACCAGTTTTGCGGCTGCATAGGTTGCTGAAGGAGGCAGTTGCTGATGAGCAGTTTGAGGATGCAGCTA GGTATCGAGATGAGTTAAAGGAAATTGTGCCACACTCTCTCTTGAAATGTTCAAGTGATGCAACTACCTTGGGGATCAGGAATCAAGTTAGGAGCTTGTA CATCGAGGGCCGAAGTCAGCCTTCAAAGGGGCAGTACTTCTTTGCATATAGAATAAGAATCACTAATAACTCAGATCGCCCCGTTCAACTTCTCAGAAGA CACTGGATTATCACAGATGCCAAAGGAAAAACTGAAAATGTTTGGGGAGTTGGAGTTATTGGTGAACAGCCAGTTATACTTCCTAGGACAGCATTTGAAT ACTCATCTGCATGCCCGCTATGCACTCCCAATGGTAGAATGGAAGGTGACTTTGAGATGAAACACATCGACAAAGCAGGCTCACCCGCGTTCAATGTTGC TATTGCCCCGTTTTCTCTCTCAATACTTGGAGATGGAAGTGATGCCTTTTGA
AA sequence Show only first row Show all	>Potri.012G082300.2 pacid=42784370 polypeptide=Potri.012G082300.2.p locus=Potri.012G082300 ID=Potri.012G082300.2.v4.1 annot-version=v4.1 MQSLNLRLSTDFSTGTRRFVPGRSFGEERRQCLSFRVSYRNCRIVACSVERDGNGEGTSSSSGSDHSPSSFLSRSQTYAMLKQQMEVAAQSEDYEEAARI RDSLKSFEEEEPVLRLHRLLKEAVADEQFEDAARYRDELKEIVPHSLLKCSSDATTLGIRNQVRSLYIEGRSQPSKGQYFFAYRIRITNNSDRPVQLLRR HWIITDAKGKTENVWGVGVIGEQPVILPRTAFEYSSACPLCTPNGRMEGDFEMKHIDKAGSPAFNVAIAPFSLSILGDGSDAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.012G082300 [exp]	0	1
AT1G10690			unknown protein		Potri.010G045200 [exp]	1.00	0.9248
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Potri.010G075900 [exp]	3.00	0.8720
AT4G26910			Dihydrolipoamide succinyltrans...		Potri.014G154700 [exp]	4.35	0.8602
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	5.29	0.8916
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	5.47	0.8902
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G290900 [exp]	7.41	0.8679
					Potri.004G212550 [exp]	8.24	0.8886
AT5G45920			SGNH hydrolase-type esterase s...		Potri.004G053800 [exp]	8.77	0.8742
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.015G004000 [exp]	9.79	0.8511
AT1G75170			Sec14p-like phosphatidylinosit...		Potri.002G261000 [exp]	10.95	0.8663

Compare expression of checked genes

Potri.012G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.