Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48195 728 / 0 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078300 [exp] 1606 / 0 AT3G48195 778 / 0.0 Phox (PX) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042108 [exp] 880 / 0 AT3G48195 657 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001232 [exp] 718 / 0 AT3G48195 642 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001233 [exp] 143 / 2e-36 AT3G48195 68 / 6e-12 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain CL0229 [poplar] [flax] RING PF13901 [poplar] [flax] zf-RING_9 Putative zinc-RING and/or ribbon
Representative CDS sequence Show only first row Show all	>Potri.012G082500.1 pacid=42782600 polypeptide=Potri.012G082500.1.p locus=Potri.012G082500 ID=Potri.012G082500.1.v4.1 annot-version=v4.1 ATGGATGGAGAGGGGACCCACGACACCATCTCCAGGGGGCCTGATCCGTTCCACTCTATCAATTCGGACGGTGGTGACGCCTCTCCGTCACAGTATTCCT CATGCGGAGAATCGGAGTTCGAGCGATACTGCAGCGCCAATTCAGTTATGGGCACACCTAGCTATAGTAGCTCATTTGGAGCCTCTTTTAATGATTGTAT AGAGTCTGATCTTGGGTCTTTGAAAAGTTTGGATGATTTTGGGTTTGATGGTAATAGGAACTTGGAGGATAGAAAGCTTTTGAATTCGGTTATTGATCGT TTAGATGGCAGTTTTGAAGAGAATGAGACTGGTAGGTTGGGAATTTGTGGAGCAAGTAGTAATGAATTGGACAGTAGGATTTGGGAGATTGAGAAAGGGG ATTTGGGTCGAGTTGGCTGTGGAGAGAATGAAGATTGTCAAAGTGGGTTGGATGTAGAGGTAGATTTGGGATTTGATGGGGGGAAAGATGGGGGTTCGTC TAGATATGGATATTCGGAGGATGATGATTCCATTTGTGGGTGTGGTTCGGATGATGAGAAAAGGAAGAATTTGTATTTTAGGAGGAATGTGTTGCTTGGT GAGGAAGGGAAAGTAGGTGGTGAGAATCCGTTGCTGATGGGTTCGTCTGTGGCTTTTGGGTCGGAAGATTGGGATGATTTTGAGCTAGAAACTGGGGGAG GCATTGGAGCTTCTTTGACCTTGGATAAATTTCAGCAGCAGGAGCAGGGTCTGGCGACTGACGGAAACTTTTTCAGTTCTATTCCTGTGGTTTCAACTGT AGCACCTGTTATTGGGGACGCAGAAATAGGGGAAGATGTGACTGAGGAACATGCTGGCATTGAAGACAGTGAAGGTGATGATTTGGGAGAGAAGCTCAAT TCCGGTACTGAGATCCCTTATGGTGTACGGAATTCTATTGTGGATCTAGTGGAAGACATGAGAGACATTTCTGTAGTCAGTTGTCAGGTACAAGGTGCTC ATGAATTGGCCAAAGATGATAAAAGTACTTTGATCATGCCATTTGGTTTTCCAGGCTATTGCGAACCACAGCAAGAAGATGCTAGAGACATTTCTCTTAA CTGCAATCAAGCCCAAGGTAGTAACGACACAACAGAGCTTTACAAAAGTTGTCCTGTCAGCGACTTCTTTGAGGTGGAGCAGGAACCTCTTGTAGAAATA ACCCCCGTAGGGTTAGGATTGAATTTTACAGATCCTCACATGGAAGGTCTGAATCCATGTGTGAAATCCGAGGAAGTTGTTTGTACCGATGATAAAAAAG CTTTGGAAAATGAAGAGGCTGGGAATTTTGAAGTAGAGGCAGATCCCCTTTCTGATACAACTAATCAACTTCATTTCTGCGCAGTTGAATACTCAGAAAA TGCAAGTGCAGAATCCCTTGTGACCCAAAAATTAAATTCAACTCTGCCAATGCTTGAAAATAACATGAAAAAAGCATCAGAAAATGCTCCTGGTTCTGTG ATTCTTTATGAAGACCATTCTGCAGTGGTTAAGGCAGAGAATTTTGAGCTTATTGAATTTTACGATGAGATTGTCAACGAAATGGAAGAAATTTTACTTG ACTCCGGTGAGTCTCCAGGGGCTAGATTTCTTCAGGGTAATCATTTGTTTCAGTCACAGCTATTACTGCCGCTAAGAGATGGTGGGTCAACTGCTTCTAC TTCTGGTACCAACGAGGCTTACCCGCTAATTACACATCCAAAGAGAATTGATAGGGTTGAAGTGGTAGGAGCAAAGCAGAAGAAAGGAGATGTCTCCCTT AGTGAAAGATTGGTTGGAGTGAAGGAATACACCATGTATATAATAAGGGTATGGAGTGGCAAAGACCAGTGGGAGGTTGAACGCAGGTATCGTGATTTCC ATACGCTCTATCGCAGGCTGAAATCATTATTTGCTGACCAGGGCTGGACTCTTCCTTCTCCTTGGTCCTCTGTGGAAAAGGAATCTAGAAAAATATTCGG GAATGCATCTCCAGATGTTGTTTCTGAGAGAAGTGTTCTTATTAAGGAGTGTTTACATTCAACTATCCATTCTGGGTTCTTTTCCAGTCCCCCAAGTGCA CTGGTTTGGTTCTTGTGTCCTCAAGGTTCATTTCCTAGTTCCCCTGCAGCAAGAATGCCAGTTGCTCGGTCTATATTTTCTAACAAAGGGGCAGATGCAG GAAATATTTCCACTTTAGGGAAGACAATATCGCTTATTGTTGAAATCCAGCCACACAAATCTACTAAACAGATGCTAGAAGTGCAACATTATACTTGTGC TGGATGCCACAAGCATTTTGATGATGGTATGACATTAATGCAGGACTTTGTACAGACACTTGGGTGGGGAAAGCCTCGGCTTTGCGAGTATACTGGTCAG TTATTTTGTTCTTCATGCCACACAAACGAGACTGCAGTTTTGCCAGCAAGAGTTCTACATTATTGGGATTTTAATCAATACCCAGTTTCTCATCTGGCCA AGTCATACTTGGATTCCATCCATGAGCAGCCCATGCTTTGTGTAAGCGCAGTCAATCCTCTCTTATTCTCCAAGGTCCCAGCCTTGCACCATATTATGGG TGTCAGGAAAAAAATTGGAACTATGCTTCAATATGTTCGATGTCCATTCCGCAGGACCATCAACAAAGTACTCGGTTCTCGAAGATATCTTCTTGAAAGC AATGATTTTTTTCCCCTTAGAGACCTCATAGATCTCTCAAAAGGGGCATTTGCAGCACTACCGGTGATGGTGGAAACTGTTTCAAGGAAAATTCTGGAGC ATATAACAGAGCAATGTCTCATATGCTGCGATGTGGGAGTCCCCTGCAGTGCCCGACAAGCTTGTAATGATCCATCTTCCCTCATATTCCCTTTTCAGGA AGGTGAAATTGAAAGGTGTGCTTCTTGCGGATCAGTATTCCACAAGCCCTGCTTCAGAAAGCTTACAAATTGCTCTTGTGGGACACGCCTTAGTGCAGAT CAGGTCATGGAGTCTACCAATATGTTGAGCCGTAAGGCCAGTGGTTTCGTGCTGGGAAGGAGATCGGGCTCTAGTTTGCATCTGGGATTGCTCTCTGGAC TATTTTCGAAGGCACGTCCAGAAAAAATGAAGGACGAAGATACTATTATCTTAATGGGTTCTTTGCCAACCACTTCTCTTTAA
AA sequence Show only first row Show all	>Potri.012G082500.1 pacid=42782600 polypeptide=Potri.012G082500.1.p locus=Potri.012G082500 ID=Potri.012G082500.1.v4.1 annot-version=v4.1 MDGEGTHDTISRGPDPFHSINSDGGDASPSQYSSCGESEFERYCSANSVMGTPSYSSSFGASFNDCIESDLGSLKSLDDFGFDGNRNLEDRKLLNSVIDR LDGSFEENETGRLGICGASSNELDSRIWEIEKGDLGRVGCGENEDCQSGLDVEVDLGFDGGKDGGSSRYGYSEDDDSICGCGSDDEKRKNLYFRRNVLLG EEGKVGGENPLLMGSSVAFGSEDWDDFELETGGGIGASLTLDKFQQQEQGLATDGNFFSSIPVVSTVAPVIGDAEIGEDVTEEHAGIEDSEGDDLGEKLN SGTEIPYGVRNSIVDLVEDMRDISVVSCQVQGAHELAKDDKSTLIMPFGFPGYCEPQQEDARDISLNCNQAQGSNDTTELYKSCPVSDFFEVEQEPLVEI TPVGLGLNFTDPHMEGLNPCVKSEEVVCTDDKKALENEEAGNFEVEADPLSDTTNQLHFCAVEYSENASAESLVTQKLNSTLPMLENNMKKASENAPGSV ILYEDHSAVVKAENFELIEFYDEIVNEMEEILLDSGESPGARFLQGNHLFQSQLLLPLRDGGSTASTSGTNEAYPLITHPKRIDRVEVVGAKQKKGDVSL SERLVGVKEYTMYIIRVWSGKDQWEVERRYRDFHTLYRRLKSLFADQGWTLPSPWSSVEKESRKIFGNASPDVVSERSVLIKECLHSTIHSGFFSSPPSA LVWFLCPQGSFPSSPAARMPVARSIFSNKGADAGNISTLGKTISLIVEIQPHKSTKQMLEVQHYTCAGCHKHFDDGMTLMQDFVQTLGWGKPRLCEYTGQ LFCSSCHTNETAVLPARVLHYWDFNQYPVSHLAKSYLDSIHEQPMLCVSAVNPLLFSKVPALHHIMGVRKKIGTMLQYVRCPFRRTINKVLGSRRYLLES NDFFPLRDLIDLSKGAFAALPVMVETVSRKILEHITEQCLICCDVGVPCSARQACNDPSSLIFPFQEGEIERCASCGSVFHKPCFRKLTNCSCGTRLSAD QVMESTNMLSRKASGFVLGRRSGSSLHLGLLSGLFSKARPEKMKDEDTIILMGSLPTTSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.003G063700 [exp]	2.23	0.8460
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.003G010400 [exp]	4.00	0.8098
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	6.16	0.8324
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Potri.014G142600 [exp]	7.21	0.7497	MAX2.2
AT4G02210			unknown protein		Potri.002G200600 [exp]	9.53	0.7747
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	9.74	0.7633
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	11.22	0.8050
AT4G38690			PLC-like phosphodiesterases su...		Potri.009G131600 [exp]	12.16	0.7382
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	12.36	0.8225
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.019G021200 [exp]	12.40	0.7805

Compare expression of checked genes

Potri.012G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.