Plant FIBer expression Database

Potri.012G082600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66540 342 / 8e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G078500
[exp]
465 / 2e-159 AT5G66540 360 / 8e-119 unknown protein
Potri.003G194550
[exp]
84 / 2e-19 AT5G66540 56 / 2e-10 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001234
[exp]
357 / 3e-118 AT5G66540 332 / 9e-109 unknown protein
Lus10042107
[exp]
358 / 3e-116 AT5G66540 400 / 6e-133 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04006 Mpp10 Mpp10 protein
Representative CDS sequence
>Potri.012G082600.1 pacid=42783513 polypeptide=Potri.012G082600.1.p locus=Potri.012G082600 ID=Potri.012G082600.1.v4.1 annot-version=v4.1
ATGGCAATACCTAGCGAAGCAGCAGCAGCAGCCTTAGAAGCCTTAAATCGCCTAAAATCGACTAACCCACCACTATGGCTAGCACCATCGCCTTCTCTGT
CTCAAACAGCACGCACGGCCTGTAAACATATCTTCTCTTCAATAAATCCTCATGTCGCTAAATCGCTCTTTGATCAACTTCTAATTGACGGGTTTGATGT
TGAGCAGATTTGGCAGCAAATTGACTTACAATCACAGCCGTTGTTGTCCACTTTACGCCGTCAAGTTTTGCACTTTGAGAAGAATCCAGAGGAAATTAGA
GTAACTGGTGAGAAGGTCTTACAAGGGAAAAACAACGGTGTAGAAGAGAAGGAGGTGAAAAAAATTGATGGGGTTGGTAATGGTGACGACGACGACATGG
ATATGTATGGAATTGATGATGAAGATGACGATGATGATGAAGAGGAGGAGGAGGTAAGTGAAGAGGAAGAGAGTGGAGAAGAGGAGGGAGAAAAGGGAGT
GGTAGAGGATAAGTTTTTGAAGATAAAGGATTTGGAGGATTTTTTGGAGGATGAGGATGCCAAGGAATATGGACTAGATACAAAGAAGAATAACAAGAAA
GACAATTTAAGTGAGGAGGATGACGAAGACGAGGATGATGATGAAGGTGAGGGAGGAGAGGATGATGAAGATGATGAGCTTGGGGTTTTTGGCGATGGTG
ATGAGGAAGATGAAGATGCAAGCAAGCATGCCAGATATGAAGACTTCTTTGGCAGTAAAAGGAGAAAAATCTTAAAAAGAAAGTCAAAAGAAGACTCAAG
CTCAGATGATGAACTTGATGATGAAGCAGTTGATGAGAGAAAAGGTAGACTTTCTACCCATGAAAAACAACTTCAGAAGCTTCAATCTGAGATAGAGCAG
ATGGAGAAAGCAAATTTGGAGCCAAAAACTTGGACCATGCAAGGAGAGGTAACTGCTGCAAGCAGACCCAAGAATAGTGCACTAGAAGTTGATTTAGACT
TTGAACACAATATGAGGCCTGCCCCTGTAATCACTGAGGAGGTTACTGCAACACTGGAAGATATGATTAAGAATAGGATCATTGAGGGACAGTTTAATGA
CATTCAGAAGGCTCCCAGTTTACCCTCTAAAGCACCGAGAGAACTGAAAGAGTTGGATGATAATAAGAGCAAGAAGGGTCTTGCCGATGTTTATGAGGAA
GAATATGTTCAAAAGACAAATCCAGCTGCTGCACCGTTATCTTTCTTAGATGAACAGAAGAAGGAGGCAAGTGTCCTGTTCAAAAAACTGTGCTTGAAGT
TGGATGCACTTTCTCACTACCACTTTGCTCCCAAACCTGTCATAGAAGACATGTCTATCCAAGCAAATGTCCCTGCTCTTGCTATGGAAGAGATTGCACC
CATGGCAGTTTCAGATGCAGCTATGCTGGCTCCAGAAGAAGTTTTTTCAGGCAAAGGTGATATTAAGGAAGAAGCAGAACTTACGCAGGCTGAGAGGAAG
AGGAGGAGGGCTAACAAGAAAAGAAAATTTAAGGCTGAATCGGTTAAAGGGACAGCAAAGAAGGCACGAGAGAACACAACACTATACCACGATGATGGCA
AGGAAGAATAG
AA sequence
>Potri.012G082600.1 pacid=42783513 polypeptide=Potri.012G082600.1.p locus=Potri.012G082600 ID=Potri.012G082600.1.v4.1 annot-version=v4.1
MAIPSEAAAAALEALNRLKSTNPPLWLAPSPSLSQTARTACKHIFSSINPHVAKSLFDQLLIDGFDVEQIWQQIDLQSQPLLSTLRRQVLHFEKNPEEIR
VTGEKVLQGKNNGVEEKEVKKIDGVGNGDDDDMDMYGIDDEDDDDDEEEEEVSEEEESGEEEGEKGVVEDKFLKIKDLEDFLEDEDAKEYGLDTKKNNKK
DNLSEEDDEDEDDDEGEGGEDDEDDELGVFGDGDEEDEDASKHARYEDFFGSKRRKILKRKSKEDSSSDDELDDEAVDERKGRLSTHEKQLQKLQSEIEQ
MEKANLEPKTWTMQGEVTAASRPKNSALEVDLDFEHNMRPAPVITEEVTATLEDMIKNRIIEGQFNDIQKAPSLPSKAPRELKELDDNKSKKGLADVYEE
EYVQKTNPAAAPLSFLDEQKKEASVLFKKLCLKLDALSHYHFAPKPVIEDMSIQANVPALAMEEIAPMAVSDAAMLAPEEVFSGKGDIKEEAELTQAERK
RRRANKKRKFKAESVKGTAKKARENTTLYHDDGKEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66540 unknown protein Potri.012G082600
[exp]
0 1
AT5G64930 HYS1, CPR5 HYPERSENESCENCE 1, CONSTITUTIV... Potri.007G082100
[exp]
1.00 0.8940
AT5G42940 RING/U-box superfamily protein... Potri.002G124300
[exp]
7.74 0.8649
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
9.00 0.8830
AT1G31870 unknown protein Potri.003G087200
[exp]
12.04 0.8429
AT5G38840 FHA SMAD/FHA domain-containing pro... Potri.004G111500
[exp]
14.00 0.8670
AT5G56210 WIP2 WPP domain interacting protein... Potri.011G169000
[exp]
14.49 0.8420
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
14.83 0.8647
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.001G129700
[exp]
14.83 0.8548
AT3G19895 RING/U-box superfamily protein... Potri.010G171100
[exp]
16.30 0.8549
AT2G36480 ENTH/VHS family protein (.1.2.... Potri.006G115600
[exp]
17.14 0.8680

Potri.012G082600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.