Plant FIBer expression Database

Potri.012G082700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17990 537 / 0 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G078801
[exp]
191 / 2e-59 AT5G17990 83 / 3e-19 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018054
[exp]
495 / 1e-174 AT5G17990 514 / 0.0 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
Lus10042050
[exp]
478 / 2e-167 AT5G17990 501 / 6e-176 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00591 Glycos_transf_3 Glycosyl transferase family, a/b domain
PF02885 Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Representative CDS sequence
>Potri.012G082700.2 pacid=42783233 polypeptide=Potri.012G082700.2.p locus=Potri.012G082700 ID=Potri.012G082700.2.v4.1 annot-version=v4.1
ATGGCAGCGAGTTTGTCTGCAGCTTCTCTTTCTTTGATATCTCAGCGGCCCAAATCGCCCGTTCTCGATTTTGAAGACAAAAACTGCTGCTTCTGTGCTC
GACCAGGTTACTACGCGAAGCAAAGTCACATAATCAGAAATGTAATAGGAGGTAGAAGCAGAAAAGGTGCGAGTCTGGTGTCTGCTTCACTGCCTACTAT
TTCTGAAAATTCAGCTTCCACCGTACCTGCATTCAATGAGTTGATTGAATCTTTGATTAATAAGGTGGATTTGTCAGAATCTGAGGCCGAAGCATCATTA
GATTATTTACTTGATGATGCTAGTGAGGCCTTGATCAGTGCTTTCTTGGTATTGCTCAGAGCCAAGGGAGAGACTTTTGAAGAGGTTGTTGGATTGGCAA
GGGCAATGTTCAAGCATGCCAGGAAGGTGGAAGGGTTGGTGGATGCTGTGGATATTGTTGGAACGGGTGGTGATGGTGCAAACACCGTTAACATTTCTAC
AGGAGCGTCAATACTTGCAGCTGCTTGTGGTGCTAAAGTAGCCAAGCAAGGGAATAGATCAAGTTCTTCAGCATGTGGAAGTGCTGACGTATTGGAAGAA
CTTGGGGTAGTAATTGACCTGGACCCAGAGGGGGTATCAAGATGTGTGAATGAAGCAGGAATCGGCTTCATGATGTCACCAAAATACCATCCTGCAATGA
AGATTGTCAGCCCTGTAAGGAAGAAATTGAAAATCAAAACCATCTTCAACATACTGGGTCCTATGCTGAATCCTGCAAGTGTTCCCTTTGCTGTTGTTGG
TGTATTCCATGAAGATTTGGTGCTGAAAATGGCCAAAGCATTGCAACGCTTTGGCATGAAGAGAGCATTGGTTGTTCATTCAGAGGGCTTGGATGAAATG
AGTCCCATTGGACCTGGAGTAGTCTTTGAAGTCAACCCCGAAAAGATATCAAAATTTTCATTCGATCCATTGGACTTTGGCATTCCGCGCTGTACACTAT
TTGACTTGCAAGGTGGAGGTCCCGATTATAATGCAGATGCTTTAAGACGTGTATTGTCGGGGGAGAAAGGCGCCATTGCTGATGCCATTATCCTAAACGC
AGCAGCTGCTCTCTTTGTCAGTGGCCGCTCTAGTAGCTTAGCGGAGGGAGTAGTTTTGGCTCGAGAGACGCAATTATCAGGGAAAGCTCTTAATACACTT
AATTTATGGATAGAGATGTCTAATAAAGTGAAAGAAGATTCTGTTGCTCAGGTCGCCTGA
AA sequence
>Potri.012G082700.2 pacid=42783233 polypeptide=Potri.012G082700.2.p locus=Potri.012G082700 ID=Potri.012G082700.2.v4.1 annot-version=v4.1
MAASLSAASLSLISQRPKSPVLDFEDKNCCFCARPGYYAKQSHIIRNVIGGRSRKGASLVSASLPTISENSASTVPAFNELIESLINKVDLSESEAEASL
DYLLDDASEALISAFLVLLRAKGETFEEVVGLARAMFKHARKVEGLVDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGNRSSSSACGSADVLEE
LGVVIDLDPEGVSRCVNEAGIGFMMSPKYHPAMKIVSPVRKKLKIKTIFNILGPMLNPASVPFAVVGVFHEDLVLKMAKALQRFGMKRALVVHSEGLDEM
SPIGPGVVFEVNPEKISKFSFDPLDFGIPRCTLFDLQGGGPDYNADALRRVLSGEKGAIADAIILNAAAALFVSGRSSSLAEGVVLARETQLSGKALNTL
NLWIEMSNKVKEDSVAQVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17990 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRA... Potri.012G082700
[exp]
0 1
AT4G30310 FGGY family of carbohydrate ki... Potri.018G095700
[exp]
3.74 0.7820
AT4G32870 Polyketide cyclase/dehydrase a... Potri.008G063900
[exp]
4.00 0.8422
AT1G15110 PSS1 phosphatidylserine synthase 1,... Potri.010G117500
[exp]
12.64 0.7343
AT3G22750 Protein kinase superfamily pro... Potri.008G156000
[exp]
17.54 0.7700
AT4G13030 P-loop containing nucleoside t... Potri.002G199700
[exp]
18.33 0.7219
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Potri.001G055201
[exp]
23.91 0.8072
AT1G30760 FAD-binding Berberine family p... Potri.011G158800
[exp]
24.12 0.8035
AT2G19450 RDS1, DGAT1, AT... TRIACYLGLYCEROL BIOSYNTHESIS D... Potri.018G066100
[exp]
25.69 0.7190
AT5G18910 Protein kinase superfamily pro... Potri.010G027301
[exp]
25.98 0.7878
AT5G41210 GSTU12, GST10, ... glutathione S-transferase THET... Potri.001G105600
[exp]
27.01 0.7080 ATGSTT1.3

Potri.012G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.