Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10330 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 270 / 7e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 268 / 8e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 266 / 9e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 267 / 2e-83 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 261 / 4e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 256 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 251 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 246 / 2e-76 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G40405 247 / 4e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003300 [exp] 738 / 0 AT1G10330 464 / 6e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 296 / 9e-95 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 285 / 8e-92 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G471600 [exp] 266 / 3e-84 AT2G20540 329 / 1e-106 mitochondrial editing factor 21 (.1) Potri.013G089400 [exp] 266 / 4e-84 AT1G33350 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 269 / 7e-84 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G141200 [exp] 265 / 1e-83 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 262 / 3e-82 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.007G073100 [exp] 259 / 1e-81 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030036 [exp] 489 / 6e-172 AT1G10330 436 / 5e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 290 / 3e-92 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 264 / 1e-83 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008825 [exp] 259 / 5e-81 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10026006 [exp] 258 / 8e-80 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029853 [exp] 253 / 1e-79 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 253 / 6e-79 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10014298 [exp] 254 / 1e-78 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 249 / 8e-78 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10027311 [exp] 249 / 2e-77 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.012G082900.2 pacid=42783924 polypeptide=Potri.012G082900.2.p locus=Potri.012G082900 ID=Potri.012G082900.2.v4.1 annot-version=v4.1 CATTTTATCAAACTCCAAATCCAAGTCAAACAAATCCATTCCCTCCTAACAACCAAAGGCCTCCTTTATAACCCGAACACAAGCCCTAAAGACAACTCAA AATGGAAAACTACCTTTCTTTTCAACACTCTAATTAGAGCCTACCTCAATTTTGGACAACACCAAAAAACTCTTCACCTCTTCACTCTCATGCTTGCCCA CCAAACCCCACCAAACAGCCACACCTTCCCTTTCATAATCAAAGCAGCCACACATTCTTGCCCCTCTATAGGCACTTCCCTTCACACCCAAGTTATCAAT CGTGGGGTTCTTTATGACCCCTTTATACAAACATCATTGTTAGGTATGTACTCGTATTTTGGTGACTTACTTAATGCCTGCAAGGTGTTTGATGAAATTT CACACCCATCTATTGTTGAATATAATGCTATGCTTGATGCTTATGCGAAGAATGGTAACATGAGTTCTGCTTATTCTCTCTTTAAAAGCATGCCTAAGAG AGATGTAGTCTCGTGGACTAGTGTTATTAATGGGTTTGCAAAGAATGGACTTTTTGGTGAGGCAATTAGGCTGTTTAGGGAGATGATGTTGCATGATTAT GTAAAGTGTTGTTTTGTTACACCTAATAAGGCGACATATGTTAGTGTGTTATCATCATGTGCTAATTTAGATGAAAGAGGGGCCCTTTATATAGGGAAGC AAATACATGGGTATATAGTAAGGAATGAGGTTTTTGTTACTATTTTTATTGGGACAGCATTGATAGATTTCTATGGAAAAGCGGGTTGTTTGAGTAATGC CATTAGAGTTTACAACCAAATGGTGGTTAAAAAGGTTTGTACTTGGAATGCTATAATTTCTTCACTTGCTAACAATGGTAGAGAAGAACAAGCTTTGGAC ATGTTTAAAAAGATGAAAGGGGAAGGTTTGTGTCCAAATGAGGTCACCTTTATTGCTGTACTTACTGCTTGTGCTCGTGCCAAGCTTGTAGAGATTGGGC TGGAGTTGTTTCAATCAATGGCTGGTGAGTTTGGCCTGGTGCCAATAATGGAGCATTATGGGTGTGTTGTTGATCTTTTGGCAAGGGCAGGGTTATTGGG GGAAGCTAGTGAATTTATAAGGAGGATGCCTTTTGAGCCAGATGCTTCAGTTTTTGGTGCACTTTTAGGTGCTTGTAAGATTCATTGA
AA sequence Show only first row Show all	>Potri.012G082900.2 pacid=42783924 polypeptide=Potri.012G082900.2.p locus=Potri.012G082900 ID=Potri.012G082900.2.v4.1 annot-version=v4.1 HFIKLQIQVKQIHSLLTTKGLLYNPNTSPKDNSKWKTTFLFNTLIRAYLNFGQHQKTLHLFTLMLAHQTPPNSHTFPFIIKAATHSCPSIGTSLHTQVIN RGVLYDPFIQTSLLGMYSYFGDLLNACKVFDEISHPSIVEYNAMLDAYAKNGNMSSAYSLFKSMPKRDVVSWTSVINGFAKNGLFGEAIRLFREMMLHDY VKCCFVTPNKATYVSVLSSCANLDERGALYIGKQIHGYIVRNEVFVTIFIGTALIDFYGKAGCLSNAIRVYNQMVVKKVCTWNAIISSLANNGREEQALD MFKKMKGEGLCPNEVTFIAVLTACARAKLVEIGLELFQSMAGEFGLVPIMEHYGCVVDLLARAGLLGEASEFIRRMPFEPDASVFGALLGACKIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.012G082900 [exp]	0	1
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Potri.010G252300 [exp]	1.41	0.8904
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	6.48	0.8899
AT1G04000			unknown protein		Potri.002G259400 [exp]	15.29	0.8261
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	20.12	0.8744
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	22.53	0.8794
					Potri.010G111100 [exp]	23.45	0.8354
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Potri.003G123200 [exp]	24.73	0.8081
AT5G57450		ATXRCC3, XRCC3	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.018G093100 [exp]	25.47	0.8632
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	29.79	0.8684
					Potri.001G205966 [exp]	39.93	0.8469

Compare expression of checked genes

Potri.012G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.