Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10650 427 / 1e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G41670 247 / 5e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 90 / 8e-20 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT3G07050 62 / 3e-10 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 53 / 2e-07 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048900 [exp] 242 / 4e-77 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 95 / 1e-21 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.002G241100 [exp] 64 / 9e-11 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 53 / 2e-07 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006578 [exp] 390 / 2e-135 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014654 [exp] 352 / 3e-120 AT4G10650 383 / 2e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031060 [exp] 241 / 8e-77 AT2G41670 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014672 [exp] 93 / 2e-20 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006927 [exp] 91 / 2e-20 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10028574 [exp] 63 / 2e-10 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 60 / 1e-09 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 46 / 3e-05 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 45 / 0.0001 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10021017 [exp] 44 / 0.0002 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.012G083100.1 pacid=42783962 polypeptide=Potri.012G083100.1.p locus=Potri.012G083100 ID=Potri.012G083100.1.v4.1 annot-version=v4.1 ATGGGAATGGCAAGTAGGAGTATAGGATTGAAGGAAATAGGAGAAGCATTAAAGAAAGCAAAATCAGGATGGTACTCCCTTCACATGGCAGCTGCGTCTC ATGCCATCGCTCAAAGAATCCCATTAGCTGATTTCATTCTTGAAGTCAGAGATGCCCGGATTCCTTTGTCATCCCACTGTCAGCTTTTGAGCAACTTCCC GCCTTCCTCTCTTCGCCGTATTATAGTAATGAACAAGACCGACCTTGCTAATCGTTCCCAACTCAAGGAGTGGACCAAGTATTTTGAACAACAAAACTGC ATTTCTTATGGAGTCAATTCCCATAACAAGGAAGACGTCAAAAAGTTCCTCAATTTCTTACAAGCCCAAGTTAGAGAATTGAAAAGGATTGATCATTCCG GTCATACCACTACAATGATGATAATTGGGATACCTAATGTTGGCAAGTCGGCTCTTGCCAACTCTTTGCATCAGCTTGGGAGGATTAGTGCTGCAGAGAA AGGAAAGTTGAAACATACAATTGTGAGTCCTCATCCCGGAGAAACAAAAAACATTAGCAGTTTGAAGATTGGTAGCCATCCCAATATTTATGTATTGGAT ACCCCAGGAATTTTACCTCCCCAGATTCATGACTCTGAAGTCTGCACCAAGCTAGCTTTAACAGGAGCAATTGAAAACTTGGTTGGGGAAAAAGAACTTG CTCGATATTTTCTTGCTATTCTCAACACAAGTGATGGATATAAGAAATGGGAAAGGTTATCCACACATGGAAATGACAAATCATTTACAGGGCAGGAAGT AGAAGGCTCAAGTGACTCAAAGTTAAACATGAAACGAAAAAGGCAATATCCCTCCGATCACACTCAGGATTTCATGGTGAATAGGGTACGTCGGACTCTG CTTGAATCTATTTCTTGTTTAGATGGAAATATAAAAAATGAGAAGGATTTGGAGGAGCTAATTGAAGTGCAATTCACAGCGTTGAGAGAAGCTTTCCTGG TTTCTTTGGAACCATGCAACGATTCTCAAACCAAGATTTCAGCTAAGTTGCTCAATCTTTATCGTACTGGGAGGCTTGGACACTACACTTTAGATCCTCT CCCTTTGTAA
AA sequence Show only first row Show all	>Potri.012G083100.1 pacid=42783962 polypeptide=Potri.012G083100.1.p locus=Potri.012G083100 ID=Potri.012G083100.1.v4.1 annot-version=v4.1 MGMASRSIGLKEIGEALKKAKSGWYSLHMAAASHAIAQRIPLADFILEVRDARIPLSSHCQLLSNFPPSSLRRIIVMNKTDLANRSQLKEWTKYFEQQNC ISYGVNSHNKEDVKKFLNFLQAQVRELKRIDHSGHTTTMMIIGIPNVGKSALANSLHQLGRISAAEKGKLKHTIVSPHPGETKNISSLKIGSHPNIYVLD TPGILPPQIHDSEVCTKLALTGAIENLVGEKELARYFLAILNTSDGYKKWERLSTHGNDKSFTGQEVEGSSDSKLNMKRKRQYPSDHTQDFMVNRVRRTL LESISCLDGNIKNEKDLEELIEVQFTALREAFLVSLEPCNDSQTKISAKLLNLYRTGRLGHYTLDPLPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10650			P-loop containing nucleoside t...		Potri.012G083100 [exp]	0	1
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	4.47	0.8901
AT1G73090			unknown protein		Potri.010G250100 [exp]	5.09	0.8940
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	12.00	0.8807
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	13.03	0.8621
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	13.41	0.8624
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	16.52	0.8816
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	16.94	0.8734
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	17.32	0.8753
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	23.10	0.8744
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.001G367500 [exp]	26.45	0.8480

Compare expression of checked genes

Potri.012G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.