Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14540 147 / 2e-38 Protein of unknown function (DUF1421) (.1) AT3G01560 131 / 6e-33 Protein of unknown function (DUF1421) (.1) AT4G28300 69 / 3e-12 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125008 [exp] 654 / 0 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.001G348500 [exp] 127 / 2e-31 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.019G095400 [exp] 75 / 5e-14 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 67 / 1e-11 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042086 [exp] 172 / 7e-46 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10018089 [exp] 164 / 1e-44 AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) Lus10032138 [exp] 122 / 2e-29 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 120 / 1e-28 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1) Lus10033692 [exp] 80 / 1e-15 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 77 / 1e-14 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10039827 [exp] 72 / 3e-13 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 72 / 4e-13 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF07223 [poplar] [flax] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Potri.012G083200.1 pacid=42783775 polypeptide=Potri.012G083200.1.p locus=Potri.012G083200 ID=Potri.012G083200.1.v4.1 annot-version=v4.1 ATGAAAAAGATGGATACTTCCAAGTACATGGATAAGCAAATCACCGAGCTTTCCCAATCCCAGTCCCTCAATTTCATGGGCGATGATGATAAACAAGAAG TACAAGATGGGGATCATGGCTTCGAATTCGACACTGTTCGCTCTCTTTCACAATCCCACGACAAAGATCTTGATGGAACCAGCCTTACGGGTTGGAGTTC CATGGATCGCATCGATTCTGCAAAATTCTCTGCCGAGAAAGTTGGGGCTTCCAGCAATGCAGCATTGATTTCTGAGATCGATAGAAAGATGAAGGAGCAT GTTGACATATTGCTACACTCTGTGGAGTGTCTCAGTGCTCGAGTGTCTCAATTGGAAAGTAAAACGCACCAAATAGAAGATGTTGTTGATGATATAAAGG AATTATTGGAATTGAATCAAGGGAAAACTGATGGGAAGCTAAGGGAAATGAAGAATATTCTTGTGGAGGTTCAAGGTGGTGTCCAAGATTTGAGAGATAA ACAAGAGATAGCAGAGGCTCAGCTACAACTGGCAAAGCTTCAAATGTCCAAAAATAACCAGCAAGTGGAAAAGCAAAATGTCACTGGTCAAGCATATGAA GCACCTTCATCGGTCTCTCAACAATCCCATCAGCTGCTTCCTGTTCCAGGTGCTAGTCCACAACTTCTTTCTCCTGCTTCTAGTGTTACAAACATACTTC CACAGATTCATCCTCGAGCAACAGCTCCAGCAACACTTGTTGCAACAGCACCACAGCTTCCCACCCATCTCCTCCAGAACCAGACGACCGGCCCCTCTGT TCCAAAGCAAGAACCTTACAATCCACTGGTAGTTCCTACTCCAGATAGCACATATCAGCAATACCAGGTTCCTCCAGCTCAACAGTTGCAACCAATACCC TATAATCACCAACCTTATCAACCAATGCCTCATTTTCCCCAAAATTCGCAGTTACCCCAACTGCCTCAAGTGCACCCAGATTCCAGTATGGTTAATCTTC AAGCCCATTATCCATCAAGCCTTCATACTGAAGTTCCTTATTCACCACCTCATAGCATCTCTCAGCCACCTGGCAGGTCTCCACCTCTCCAACAGTATAA TGTGGGTTCTACCCAGCAGATCTATCCTCAACCCCCAAACAGGCATTATGTAGAGTCTACTCTTGCAAGTTTGCCAGCACATGCGAAAACAAACATTATG GACTCTTACCATTATGGTGCTTCTCCATGCAACAATGGCAGTTCATCTATAAAACCATCGCAACCCATACCATCTCCTCCGGTCCTGGCTGGTGAAAGCA TTTACAAACAATTACCAACTGCCCGTCTACTGCCGAATGCTATACCATCTGCCTCTAATGTGGATGCTGGCTCAGGATCAGGTTCTGGTGGGAGTGGAAA CAGGATACCAGTTGATGATGTTGTTGACAAGGTTGCTACGATGGGATTTCGTAGAGACTTGGTGAGAGCAACAGTGAGAAAACTGACGGACAATGGGCAG TCAGTTGACTTGAATACGGTGCTAGATAAACTGATGAATGGGTAA
AA sequence Show only first row Show all	>Potri.012G083200.1 pacid=42783775 polypeptide=Potri.012G083200.1.p locus=Potri.012G083200 ID=Potri.012G083200.1.v4.1 annot-version=v4.1 MKKMDTSKYMDKQITELSQSQSLNFMGDDDKQEVQDGDHGFEFDTVRSLSQSHDKDLDGTSLTGWSSMDRIDSAKFSAEKVGASSNAALISEIDRKMKEH VDILLHSVECLSARVSQLESKTHQIEDVVDDIKELLELNQGKTDGKLREMKNILVEVQGGVQDLRDKQEIAEAQLQLAKLQMSKNNQQVEKQNVTGQAYE APSSVSQQSHQLLPVPGASPQLLSPASSVTNILPQIHPRATAPATLVATAPQLPTHLLQNQTTGPSVPKQEPYNPLVVPTPDSTYQQYQVPPAQQLQPIP YNHQPYQPMPHFPQNSQLPQLPQVHPDSSMVNLQAHYPSSLHTEVPYSPPHSISQPPGRSPPLQQYNVGSTQQIYPQPPNRHYVESTLASLPAHAKTNIM DSYHYGASPCNNGSSSIKPSQPIPSPPVLAGESIYKQLPTARLLPNAIPSASNVDAGSGSGSGGSGNRIPVDDVVDKVATMGFRRDLVRATVRKLTDNGQ SVDLNTVLDKLMNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	1.00	0.9082
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.006G279800 [exp]	4.69	0.8913
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	6.00	0.8749
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.003G142900 [exp]	7.21	0.8599	Pt-HEN3.2
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Potri.016G075200 [exp]	9.32	0.8020
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.003G034200 [exp]	10.00	0.8483
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.003G210500 [exp]	11.74	0.8455
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Potri.004G111500 [exp]	12.68	0.8693
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	16.43	0.8717
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	16.97	0.8675

Compare expression of checked genes

Potri.012G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.