Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24670 489 / 1e-171 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G23320 385 / 1e-131 TAR1 tryptophan aminotransferase related 1 (.1) AT1G70560 385 / 1e-131 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT1G34040 251 / 2e-78 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34060 236 / 2e-72 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125108 [exp] 687 / 0 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.010G044500 [exp] 396 / 1e-135 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.008G187800 [exp] 396 / 1e-135 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.002G063800 [exp] 259 / 1e-81 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G064000 [exp] 250 / 6e-78 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039944 [exp] 486 / 1e-170 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 466 / 1e-163 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10036846 [exp] 388 / 1e-132 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10006199 [exp] 383 / 6e-131 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10018088 [exp] 392 / 3e-129 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10028695 [exp] 234 / 1e-71 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 220 / 3e-66 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10042085 [exp] 43 / 6e-05 ND 43 / 2e-08 Lus10042084 [exp] 0 / 1 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF04864 [poplar] [flax] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Potri.012G083300.1 pacid=42783539 polypeptide=Potri.012G083300.1.p locus=Potri.012G083300 ID=Potri.012G083300.1.v4.1 annot-version=v4.1 ATGGCGATGCTTTTCAATATTTTCTCATTGAAGAACTTACTGGTGCTGTCTCTAGCACTCAATTTGAGCTTGGTTTTGAGAGTGCTGTATGAGAAAGACT TTGAAGTCAATAATGGGCGCTCTGTGGACACTCAGAAAGATGCATTAACGACTACTGATAGGGTGCTTAGTGAGGCACGAGCTACTCAGAGGGCACGTCC GTCCATGCCCTCTTCTTCCTCCACAGTTGATAGCGATGGCGGGGACACAATAATCAATCTTGATCATGGCGATCCGACAATGTACGAGAGATTTTGGCAA CAAGCGGGTGACAAATCCACCATTGTTATCCCTGGTTGGCAATCAATGAGCTACTTCTCTGATGCTGGGAGCCTTTGCTGGTTCTTAGAGCCAGAGTTTG CTAAAGAGATTATTAGACTGCATAAAACAGTTGGCAACGCAGTCACCGAGGACCGCTACATTGTTGTTGGGACAGGTTCTACACAGCTTTATCAAGCTGT ATTATATGCACTGTCCCCCCAAGATGCAGTGGAACCCCTCAGTGTTGTATCTGCAGCCCCTTACTACTCCTCTTATCCATTGATCACCGACTGCCTGAAG TCGGGGCTTTATAAATGGGCTGGTGATGCCCGAAGCTTCAATAAAGAGGGACCATTTATTGAACTCGTTACCTCCCCTAACAATCCAGACGGATACGTCA GGCAGTCTGTTGTCAACAAAAGTGGGGGCATCTTGGTTCATGATCTTGCATATTATTGGCCACAATACACGCCAATTGCTTCTGCTGCTAATCATGACAT TATGCTCTTCACCGTGTCGAAAAGCACAGGACATGCTGGGATGCGCATTGGCTGGGCTCTTGTCAAGGATGAAGAAGTAGCCAAAAAGATGGTGAAATTC GTAGAGCTCAACACAATCGGCGTGTCTAAGGATTCACAGCTTCGAGCAGCTAAAGTGCTGCAAGTTGTGATCCATAGCTGCCAATATCCTACCAGCCTTG GGTCCCTATTTGATTTTTCTGCCCACCTCATGGAAGAGAGGTGGAAGTTATTGAGGGCCGCTGTTAGGCAAAGTGGTCTCTTTACTTTGCCTGAGTTTTC CCCTGGATCATGCAGCTTTCTCAATAGATCCTTTGCTCCTCAACCTGCTTTTGCGTGGTTGAAGTGCCAAGAACCCATGGAAGACTGCGAAGGCTTTCTC CGATCTAACAACATCATAACAAGAAGTGGTAAACACTTCGGTGTTAGCCCACAATATGTTAGGATAAGCATGCTAGATCGAGATGAAAACTTCTATATAT TTGTAGAGAGATTGTCCACCATCCACCAGCGACAATCCGTGCAAGTGGATGAGACGTACGGGGGAATAGAATAG
AA sequence Show only first row Show all	>Potri.012G083300.1 pacid=42783539 polypeptide=Potri.012G083300.1.p locus=Potri.012G083300 ID=Potri.012G083300.1.v4.1 annot-version=v4.1 MAMLFNIFSLKNLLVLSLALNLSLVLRVLYEKDFEVNNGRSVDTQKDALTTTDRVLSEARATQRARPSMPSSSSTVDSDGGDTIINLDHGDPTMYERFWQ QAGDKSTIVIPGWQSMSYFSDAGSLCWFLEPEFAKEIIRLHKTVGNAVTEDRYIVVGTGSTQLYQAVLYALSPQDAVEPLSVVSAAPYYSSYPLITDCLK SGLYKWAGDARSFNKEGPFIELVTSPNNPDGYVRQSVVNKSGGILVHDLAYYWPQYTPIASAANHDIMLFTVSKSTGHAGMRIGWALVKDEEVAKKMVKF VELNTIGVSKDSQLRAAKVLQVVIHSCQYPTSLGSLFDFSAHLMEERWKLLRAAVRQSGLFTLPEFSPGSCSFLNRSFAPQPAFAWLKCQEPMEDCEGFL RSNNIITRSGKHFGVSPQYVRISMLDRDENFYIFVERLSTIHQRQSVQVDETYGGIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24670		TAR2	tryptophan aminotransferase re...		Potri.012G083300 [exp]	0	1
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	9.89	0.9381
ATCG01010		ATCG01010.1, ND...	NADH-Ubiquinone oxidoreductase...		Potri.001G342933 [exp]	15.87	0.9237
AT3G26650		GAPA-1, GAPA	GLYCERALDEHYDE 3-PHOSPHATE DEH...		Potri.002G220566 [exp]	16.61	0.9333
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.004G218400 [exp]	18.54	0.9313	PETF.3
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020400 [exp]	20.34	0.8933
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Potri.004G162400 [exp]	21.72	0.9241
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.017G112700 [exp]	22.18	0.9254
AT1G21350			Thioredoxin superfamily protei...		Potri.002G071000 [exp]	33.77	0.9253
AT3G19660			unknown protein		Potri.017G109800 [exp]	43.95	0.9096
AT1G56190			Phosphoglycerate kinase family...		Potri.008G084500 [exp]	44.59	0.9208

Compare expression of checked genes

Potri.012G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.