Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58400 110 / 2e-25 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 103 / 2e-23 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G59780 100 / 1e-22 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 96 / 8e-21 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 87 / 4e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 86 / 9e-18 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 80 / 1e-15 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 80 / 1e-15 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43470 79 / 1e-15 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 73 / 2e-13 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044601 [exp] 274 / 1e-87 AT1G58400 112 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.008G187700 [exp] 258 / 1e-80 AT3G07040 0 / 1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 164 / 9e-44 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 145 / 2e-37 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 145 / 3e-37 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 137 / 8e-35 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 137 / 1e-34 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 136 / 2e-34 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 135 / 6e-34 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028075 [exp] 450 / 3e-153 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028076 [exp] 362 / 1e-119 AT1G58848 147 / 6e-37 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10025625 [exp] 275 / 3e-90 AT5G43470 101 / 6e-24 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) Lus10025626 [exp] 161 / 5e-45 AT3G46530 87 / 5e-18 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 127 / 2e-31 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 125 / 2e-30 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 123 / 6e-30 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 116 / 2e-27 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 115 / 3e-27 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 110 / 1e-25 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.012G083700.2 pacid=42782970 polypeptide=Potri.012G083700.2.p locus=Potri.012G083700 ID=Potri.012G083700.2.v4.1 annot-version=v4.1 ATGATGACCTCCGAGATAATGGAACTAATTAAAGTCACTGTTTTCTCTCCTTATCGTGTGTTCCTTCGCGATAGCTACATAACAGCTCATCCTGATTCAG ACTTTTCCATTCCACGTAAAGCACGCCGTATTTTAACTCCAGATATGACGAAAGTTGCACAGAGTTTAAACAATATCCAACCCCGGTCTTTATTCTTGTT CGGGAAGCAAGAACTTTCTGGCGAGAACTGGCTGAATTTCGAAGGGGCAAAATTCTTACGGGTGCTAGATCTAGAAGATGCCAAGATCAGGAGATTACCA GATGAAGTGGCAGACCTGATTCACCTGGCATACCTTGGATTGAAGAACAATGACATAAATGAGCTTCCAGATAGACTTGGTAATTTGCGAGCACTACAGA GTTTGGATATTAGATGGTGTGGAGACTTGACAGAACTATCAACCGAGATCCTAAAGCTTGTAAGACTGAGGCACCTCAAAATGTTCAAGAGCAGAAATGT TAGCGGAATGAAGCTACCAGGGGGGGTAGGTACACTTGGAAGCCTCCTGACCCTTACTGGTGTACATGCCGGTGGCGAAATTGCAGGAGAACTAAGGAAG CTGACACAGCTAAGAAGGCTGGGAGTGATGGATGTTGCGGAAGAGAATGCAAACGAGCTATATGCTTCTATAATGGTGATGCAGGGTCTTCTTTCCCTAT CTCTAGAAGCAAAGCACACTTTTGACCAAGGTCACCTTGTCCTCCGGGATTCATTCTCACCGCCGTCTATTCTTAGGAAACTCCGCCTTGAAGGTCTTCT AGAAAAAACACCAAACTGGCTTGGTTCAATGGAAAGTCTTACAAAGCTGAGGCTAGGTTTTTCTCATTTATCTGAGAATCCAACATTAGTTCTTCAGGTC CTACCTAATTTGGAAAAACTAACCTTATGGCATGCTTATGATGGAAGGCAGTTAGGAAAAGATTTCTGTAAGCCTGGTGGATTTCCCAAGCTTGAGGTTC TCATAATTGCCTCTCGTGTTCTTGAGGAATGGACAGAGCTTGAGGAAGGAGCTCTACCAAGATTAAAGTATCTTCACTTCCATAACTGCTTGAATCTGAG GATGCTCCCTGAAGGTTTGCAATTTGTCACTACAGTGGAGGAACTGGTTTTGCTGCCTTTGCTTGATGAGCATGAAGAAAGATTGAAACCTGATGGTGGG TTAGAAAATTACAAGATTCGGAACATTCCAAAGATAACATTCATCCCTGCATCTGTGGTGGCTTCTAGGTTCAATGAAAGGTTCAGCACTCCCCCAACCC CAGCAACTGATAAAGAATGA
AA sequence Show only first row Show all	>Potri.012G083700.2 pacid=42782970 polypeptide=Potri.012G083700.2.p locus=Potri.012G083700 ID=Potri.012G083700.2.v4.1 annot-version=v4.1 MMTSEIMELIKVTVFSPYRVFLRDSYITAHPDSDFSIPRKARRILTPDMTKVAQSLNNIQPRSLFLFGKQELSGENWLNFEGAKFLRVLDLEDAKIRRLP DEVADLIHLAYLGLKNNDINELPDRLGNLRALQSLDIRWCGDLTELSTEILKLVRLRHLKMFKSRNVSGMKLPGGVGTLGSLLTLTGVHAGGEIAGELRK LTQLRRLGVMDVAEENANELYASIMVMQGLLSLSLEAKHTFDQGHLVLRDSFSPPSILRKLRLEGLLEKTPNWLGSMESLTKLRLGFSHLSENPTLVLQV LPNLEKLTLWHAYDGRQLGKDFCKPGGFPKLEVLIIASRVLEEWTELEEGALPRLKYLHFHNCLNLRMLPEGLQFVTTVEELVLLPLLDEHEERLKPDGG LENYKIRNIPKITFIPASVVASRFNERFSTPPTPATDKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58400			Disease resistance protein (CC...		Potri.012G083700 [exp]	0	1
AT4G33870			Peroxidase superfamily protein...		Potri.001G182400 [exp]	4.00	0.9659
					Potri.009G112799 [exp]	4.89	0.9514
					Potri.001G073350 [exp]	7.93	0.9538
					Potri.005G011350 [exp]	8.36	0.9420
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.007G119900 [exp]	9.79	0.9497
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	10.72	0.9505	Pt-AGL8.2
AT2G03350			Protein of unknown function, D...		Potri.010G162400 [exp]	11.66	0.9176
AT5G07820			Plant calmodulin-binding prote...		Potri.012G067100 [exp]	11.74	0.9147
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	11.83	0.9181
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.019G050700 [exp]	11.83	0.9020

Compare expression of checked genes

Potri.012G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.