Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HDA6.2,HDA909
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63110 717 / 0 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 582 / 0 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G35600 499 / 3e-176 HDA7 histone deacetylase7 (.1) AT3G44680 479 / 4e-168 HDA09, HDA9 histone deacetylase 9 (.1) AT3G44490 116 / 7e-31 HDA17 histone deacetylase 17 (.1) AT3G18520 107 / 1e-24 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT1G08460 105 / 1e-24 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61060 103 / 1e-23 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 99 / 9e-22 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT3G44660 87 / 4e-20 HDA10 histone deacetylase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082500 [exp] 829 / 0 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.004G209800 [exp] 586 / 0 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 583 / 0 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.001G460000 [exp] 491 / 7e-173 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G092900 [exp] 109 / 2e-25 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 97 / 2e-21 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 94 / 6e-21 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 87 / 2e-18 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.006G230300 [exp] 69 / 2e-12 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019486 [exp] 742 / 0 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 634 / 0 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001605 [exp] 586 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 558 / 0 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020570 [exp] 492 / 3e-173 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 478 / 2e-166 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10034689 [exp] 107 / 8e-25 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 103 / 1e-23 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10001850 [exp] 102 / 1e-23 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10022906 [exp] 103 / 2e-23 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [poplar] [flax] Arginase PF00850 [poplar] [flax] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Potri.012G083800.1 pacid=42782891 polypeptide=Potri.012G083800.1.p locus=Potri.012G083800 ID=Potri.012G083800.1.v4.1 annot-version=v4.1 ATGCTGGACACTAATGGAGGCGCCTCCCTACCATCAACAGGAACAGACGCAGAAAAACGCCGAGTCAGCTACTTCTACGAACCCACAATCGGTGAGTACT ACTACGGTCAAGGCCACTCAATGAAACCCCACAGAATCCGAATGGCCCACAACTTGATAATCAACTACGCTCTCCACCGTCGGATGGAAATCAACCGTCC ATTCCCAGCAGGTCCTGAAGACATAGGGTGGTTCCATTCTGATGATTACGTGGAATTCTTGTCTTCAGTGTCACCACAATCAGCGAGTGATCCGGCACAT GGGAGGCAGTTGAAGAGGTTTAATATTGGTGAAGATTGTCCGGTTTTTTATGGGTTATTTGAGTTTTGTCAGGCCTCTGCTGGTGGCTCAATTGGCTGTG CTGTTAAGCTTAATAGAGGGGATGCTGATATTGCTTTGAATTGGGCTGGTGGCTTACATCATGCGAAGAGGAGTGAGGCTTCTGGGTTTTGTTATGTTAA TGATATTGTTCTTGGCATTCTTGAGTTGCTCAAAGTTCATAAGCGTGTATTGTATGTAGATATTGATGTCCACCATGGCGATGGTGTTGAGGAAGCATTC TATACTACTGACAGGGTTATGACTGTGTCCTTCCATAAATATGGAGATTTCTTTCCAGGGACGGGGCACATCAAGGACATTGGAGTTGGGAAAGGGAAGA ACTATGCCCTGAATATTCCTTTAAAAGATGGGATGGATGACGAATGTTTCCGTGCTCTGTTTCGGCCACTCATCCAAAAAGTGATGGAGGTTTATCAACC TGATGCAGTTGTTCTCCAATGTGGAGCAGATTCATTATCTGGTGATAGGTTGGGGTGTTTCAACCTGTCTGTTAAGGGCCATGCAGACTGCCTTAGATTT ATTAGATCTTTTAATGTTCCTCTGATGATCTTGGGTGGGGGTGGGTATACTATCAGGAATGTTGCCCGTTGCTGGTGCTATGAGACAGCAGTTGCAGTTG GGGTGGAACCAGATAACAAATTGCCTTACAATGAGTACTACGAGTACTTTGGCCCTGAATACACACTTCATGCTGACCCATCCAATATGGAGAACCTAAA CACACCCAAAGACATGGAGAGAATAAGGAACATACTGCTAGAGCAACTTTCTAGACTGCCTAATGCTCCCAGTGTACCTTTTCAGACAACACCAGCTACA ACTGAAGTTCCGGAAGAGGATGAAGAGAACATGGATCAAAGACCAAAGCGTCATGTATGGAATGGTGTTGATTATGAGTCTGATCATGATGAAGATGAGA AACCGGAACCCGGATTTTTCTGA
AA sequence Show only first row Show all	>Potri.012G083800.1 pacid=42782891 polypeptide=Potri.012G083800.1.p locus=Potri.012G083800 ID=Potri.012G083800.1.v4.1 annot-version=v4.1 MLDTNGGASLPSTGTDAEKRRVSYFYEPTIGEYYYGQGHSMKPHRIRMAHNLIINYALHRRMEINRPFPAGPEDIGWFHSDDYVEFLSSVSPQSASDPAH GRQLKRFNIGEDCPVFYGLFEFCQASAGGSIGCAVKLNRGDADIALNWAGGLHHAKRSEASGFCYVNDIVLGILELLKVHKRVLYVDIDVHHGDGVEEAF YTTDRVMTVSFHKYGDFFPGTGHIKDIGVGKGKNYALNIPLKDGMDDECFRALFRPLIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF IRSFNVPLMILGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPEYTLHADPSNMENLNTPKDMERIRNILLEQLSRLPNAPSVPFQTTPAT TEVPEEDEENMDQRPKRHVWNGVDYESDHDEDEKPEPGFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.012G083800 [exp]	0	1	Pt-HDA6.2,HDA909
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Potri.010G189700 [exp]	4.79	0.8763
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	5.29	0.8694
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	10.00	0.8639
AT3G21110		PUR7, ATPURC	PURIN C, purin 7 (.1.2)		Potri.017G051500 [exp]	10.19	0.8543
AT5G39960			GTP binding;GTP binding (.1)		Potri.004G230600 [exp]	10.58	0.8563
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	10.58	0.8410
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	11.48	0.8682
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	14.49	0.8609
AT5G61390			Polynucleotidyl transferase, r...		Potri.015G062000 [exp]	18.81	0.8137
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.013G090600 [exp]	18.97	0.8244

Compare expression of checked genes

Potri.012G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.