Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42490 1250 / 0 Copper amine oxidase family protein (.1) AT1G31690 255 / 2e-74 Copper amine oxidase family protein (.1) AT1G31710 245 / 1e-70 Copper amine oxidase family protein (.1) AT1G31670 245 / 3e-70 Copper amine oxidase family protein (.1) AT3G43670 240 / 8e-69 Copper amine oxidase family protein (.1) AT1G62810 234 / 2e-66 Copper amine oxidase family protein (.1) AT4G12290 230 / 6e-65 Copper amine oxidase family protein (.1) AT4G14940 216 / 1e-60 ATAO1 amine oxidase 1 (.1) AT4G12280 130 / 2e-33 copper amine oxidase family protein (.1) AT4G12270 122 / 3e-29 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082900 [exp] 1431 / 0 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 1288 / 0 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 266 / 2e-78 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 262 / 5e-77 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 258 / 2e-75 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 252 / 2e-73 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 248 / 2e-71 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 234 / 3e-66 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004618 [exp] 1191 / 0 AT2G42490 1207 / 0.0 Copper amine oxidase family protein (.1) Lus10026696 [exp] 1188 / 0 AT2G42490 1208 / 0.0 Copper amine oxidase family protein (.1) Lus10019485 [exp] 1144 / 0 AT2G42490 1154 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 272 / 1e-80 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 271 / 2e-80 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 261 / 1e-76 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 256 / 8e-75 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10024571 [exp] 239 / 5e-68 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 236 / 4e-67 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 233 / 1e-65 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01179 [poplar] [flax] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [poplar] [flax] CuAO_N2_N3 PF02728 [poplar] [flax] Cu_amine_oxidN3 Copper amine oxidase, N3 domain
Representative CDS sequence Show only first row Show all	>Potri.012G084400.1 pacid=42783710 polypeptide=Potri.012G084400.1.p locus=Potri.012G084400 ID=Potri.012G084400.1.v4.1 annot-version=v4.1 ATGGCCTCAACTTCGAAAAAGACGACGCCTTCTCCTCCTTGTTGTGACTCTACTACTCCCGCTCCTCCTCCCATTCGCCGTGACGCCACCTCCTCCTCCT CTTTGGTTCCGCAAGATTGGACGGTTCCCTCCGCTGATCGCCGCCCCGTTGTCGATTCTCTTCCAGAACCTTCCAAAACAGCCTCCGGTACTAAAACTGT TATCCCAGTCATGTTAAGGGCTCAGACCAGCCATCCTTTGGATCCTTTGTCTGCTGCCGAAATCTCTGTTGCAGTGGCAACTGTTAGGGCTGCTGGAGCC ACTCCTGAGCTTAGAGATAGCATGCGTTTCGTTGAGGTGGTTCTGTTTGAACCGGATAAGCATGTTGTTGCACTGGCAGATGCATATTTCTTTCCTCCTT TCCAACCATCATTGCTTCCCAGATCAAAAGGTGGACCTATAATTCCTACAAAGTTGCCTCCAAGAAGGGCTAGACTTGTTGTTTACAACAAACGGTCAAA TGAGACAAGCTTATGGATTGTGGAGCTCTCTGAAGTACATGCAGCGACTCGAGGTGGACATCATAGGGGAAAAGTGATTTCATCTCAAGTTGTTCCAGAT GTTCAGCCTCCAATGGATGCTGTTGAATATGCTGAATGTGAAGCTGTTGTCAAAGACTTTCCTCCATTTAGAGAGGCAATGAAAAAAAGAGGTATTGAAG ACATGGACCTTCTGATGGTTGATGCCTGGTGTGTTGGTTACCACAGTGATGCTGATGCTCCAAGCAGAAGACTTGCCAAACCACTTATATTTTGTAGAAC TGAGAGTGACTGTCCAATGGAAAATGGTTATGCACGTCCAGTTGAGGGCATCCATGTACTTGTTGATATGCAAAACATGAGGGTCATTGAATTTGAAGAC CGTAAACTTGTTCCCTTACCTCCAGCTGATCCATTGAGGAACTATACTCCTGGTGAAACAAGAGGTGGTGTTGATCGAAGTGATGTGAAACCTTTACAAA TTATCCAGCCTGAAGGTCCAAGCTTTCGTGCTAATGGACACTATGTAGAATGGCAGAAGTGGAATTTTCGCATTGGATTCACTCCTAGGGAGGGCTTGGT TATACATTCAGTTGCCTATGTTGATGGTAGTAGAGGGAGACGACCTATAGCCCACAGGTTAAGCTTTGTAGAGATGGTAGTTCCTTATGGAGATCCAAAT GAGCCACATTACCGAAAGAATGCATTTGATGCAGGGGAAGATGGCCTTGGTAAAAATGCACATTCCCTAAAAAAGGGCTGTGATTGTTTGGGCTTTATTA AATACTTTGATGCACACTTTACAAACTTCACTGGAGGTATTGAAACAATTGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGAATTCTATGGAAGCA TCAGGATTGGAGGACAGGTTTAGCAGAAGTGCGAAGGTCTAGGCGGCTGACGGTGTCCTTTATTTGCACTGTTGCTAATTATGAATATGGATTTTTCTGG CACTTCTATCAGGATGGAAAAATCGAAGCTGAAGTTAAGCTTACGGGAATCCTTAGCTTAGGAGCATTACAACCTGGGGAGACTCGAAAATATGGTACTA CCATTGCCCCAGGTCTTTATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGTATGGACATGGCTGTTGATTGCAGACCAGGTGAAGCTTTCAATCAGGT TGTGGAGGTAAATGTTGAAGTTGAGAAACCTGGGGAGAAAAATGTCCACAATAATGCATTTTATGCCAAAGAGACGCTGCTCCGATCAGAATTGGAAGCA ATGCGTGCTTGCAATCCACAAACAGCTCGCCATTGGATTGTTAGAAACACTAGAACAGTAAACAGAACTGGACAATTAACAGGCTACAAGCTAGTACCTG GTTCCAATTGTTTGCCATTGGCTGGTTCAGAGGCTAAGTTTTTGAGGCGAGCTGCATTTTTAAATCACAATCTTTGGGTTACACCTTATACACATGGTGA GATGTTTCCTGGAGGAGAGTTCCCTAATCAAAATCCACGTGTTGATGAAGGACTGGCTACATGGGTTAAGCAGAATCGACCTTTAGAAGAAACTGATATA GTTCTTTGGTATGTGTTTGGGATCACACATGTTCCTCGGTTGGAAGATTGGCCGGTCATGCCAGTGGAGCGCTTAGGCTTTATGCTTATGCCTCATGGGT TTTTCAACTGCTCTCCTGCTGTGGATGTTCCTCCCAGCACATGCGAATTGGATGCCAAAGACAATGATGTTAAAGACAATGGTGTAACGAAGCCACTTCA AAATGGGGTGCTAGCCAAGCTCTAA
AA sequence Show only first row Show all	>Potri.012G084400.1 pacid=42783710 polypeptide=Potri.012G084400.1.p locus=Potri.012G084400 ID=Potri.012G084400.1.v4.1 annot-version=v4.1 MASTSKKTTPSPPCCDSTTPAPPPIRRDATSSSSLVPQDWTVPSADRRPVVDSLPEPSKTASGTKTVIPVMLRAQTSHPLDPLSAAEISVAVATVRAAGA TPELRDSMRFVEVVLFEPDKHVVALADAYFFPPFQPSLLPRSKGGPIIPTKLPPRRARLVVYNKRSNETSLWIVELSEVHAATRGGHHRGKVISSQVVPD VQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDMDLLMVDAWCVGYHSDADAPSRRLAKPLIFCRTESDCPMENGYARPVEGIHVLVDMQNMRVIEFED RKLVPLPPADPLRNYTPGETRGGVDRSDVKPLQIIQPEGPSFRANGHYVEWQKWNFRIGFTPREGLVIHSVAYVDGSRGRRPIAHRLSFVEMVVPYGDPN EPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGFIKYFDAHFTNFTGGIETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLTVSFICTVANYEYGFFW HFYQDGKIEAEVKLTGILSLGALQPGETRKYGTTIAPGLYAPVHQHFFVARMDMAVDCRPGEAFNQVVEVNVEVEKPGEKNVHNNAFYAKETLLRSELEA MRACNPQTARHWIVRNTRTVNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLNHNLWVTPYTHGEMFPGGEFPNQNPRVDEGLATWVKQNRPLEETDI VLWYVFGITHVPRLEDWPVMPVERLGFMLMPHGFFNCSPAVDVPPSTCELDAKDNDVKDNGVTKPLQNGVLAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42490			Copper amine oxidase family pr...		Potri.012G084400 [exp]	0	1
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	8.94	0.6003	Pt-VAP27.5
AT3G14240			Subtilase family protein (.1)		Potri.003G071800 [exp]	17.11	0.6467
					Potri.005G098650 [exp]	20.37	0.6088
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.007G012200 [exp]	41.95	0.5844
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	42.00	0.5594
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	44.47	0.5552
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	46.20	0.5641
AT5G45320			unknown protein		Potri.004G234500 [exp]	54.40	0.5978
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	54.47	0.5576
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Potri.007G011700 [exp]	59.48	0.5484

Compare expression of checked genes

Potri.012G084400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.