Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63120 703 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 650 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G01540 423 / 1e-140 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 416 / 1e-137 DEAD box RNA helicase family protein (.1.2) AT3G06480 410 / 2e-130 DEAD box RNA helicase family protein (.1) AT1G20920 377 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 358 / 4e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 330 / 8e-106 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 331 / 1e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 310 / 7e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083000 [exp] 821 / 0 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 660 / 0 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.017G071400 [exp] 426 / 5e-140 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 425 / 2e-139 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 416 / 2e-132 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G003600 [exp] 381 / 4e-119 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 371 / 2e-118 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 377 / 1e-117 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 337 / 6e-108 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019484 [exp] 746 / 0 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 739 / 0 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 652 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 651 / 0 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032133 [exp] 415 / 4e-137 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 411 / 1e-135 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 411 / 2e-130 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 399 / 2e-129 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 390 / 3e-122 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 365 / 2e-116 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.012G084600.1 pacid=42783236 polypeptide=Potri.012G084600.1.p locus=Potri.012G084600 ID=Potri.012G084600.1.v4.1 annot-version=v4.1 ATGATGAACCCTTACGATAACCGGTACACCGACCCCGACTCTTACCGTCACCGTCGCAGTGGTTTAATGGGCCAACAGCCTCCACTGGGGGCCACTTACG GACGCGGTGGACCTGTTCCTTATGGAAGTGGAGGTGGTCCTCTGCCTCCGTCTTTTGCGAGTAGAGGAGGTCCTGCTCCAGTTGGTGGAGGTTATCCTGC GTTTGAGCCCCCTGCTAGTGGATTCAGTGTTGGACGGGGTGGTGGCGGAGGAGGAGGAAGGGGAAGGGGATTCAGTGGTGGCCGTGGTTCTAATTTTTAT ACTGGGGATAGAAGAAATGATGCCGGTCATGGGAGAGGCTGGAATTCTGGTTCTGGCCGTGGTGGGAGGGGGTATGGTGGTGGTGGAAGAGGAGGGAGGC ATGGAGGGGGAGGTCCGAAAGGAGAATTGGATAATATTGCACTTCCAAAGCAGGATTTTGGGAATTTGGTACCTTTCGAGAAGAATTTCTACTTTGAGAA TCCTTCGATTAGGGCTTTGTCGGAGCATGAAGTGGTGATGTATCGTACAAGAAGAGAGATTACGGTTGAAGGCCATGATGTGCCTAAGCCTATTCGCCTG TTTCATGAGGCCAATTTCCCTGATTACTGCTTACAGGTGATTGCTAAGTTGGGTTTTGTTGAGCCAACACCAATTCAGGCTCAAGGGTGGCCGATGGCTC TAAAGGGTAGAGATTTAATTGGCATTGCTGAGACCGGTTCTGGTAAGACATTGGCATACATGCTACCAGCTTTTGTGCATGTTGCTGCGCAGCCTCGATT GGTACAAGGTGATGGTCCGATTGTGTTAGTATTAGCACCTACCAGAGAGCTGGCAGTTCAAATTCAAGAAGAAGGTTTAAAGTTTGGTTCGCCTGCTAAT ATTAGGAGCACTTGCATATATGGTGGTGCTCCCAAGGGACCCCAAATTCGTGATCTCCAAAGAGGTGTTGAAATTGTCATCGCTACCCCTGGTCGACTAA TAGATATGCTGGAAGCTCAACACACAAATTTGCGAAGAGTCACATACCTGGTGTTGGACGAGGCTGATCGAATGTTGGACATGGGGTTTGAGCCTCAAAT TAGGAAAATTATATCTCAAATTCGACCAGATAGACAGACATTATATTGGAGTGCAACATGGCCCAGGGAGGTTGAAATTTTAGCAAGGCAGTTTTTGCAC AACGCATACAAGGTAATCATAGGATCGGCAGATTTAAAAGCAAACCAATCTATAAACCAAGTTGTTGAGGTCATCATGGACATGGAGAAGTATAATAGGC TGATCAAATTGCTGAAAGAAGTGATGGATGGAAGTCGGCTTCTGATTTTCATGGAGACAAAAAAAGGCTGTGACCAAGTTACAAGGCAGTTGAGAATGGA TGGATGGCCAGCATTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCCTGGCAGAATTCAAAAGTGGCAGAAGTGCAATAATGACTGCC ACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAACTATGATTTTCCTTCCAGCCTCGAGGATTATGTTCACAGGATAGGCC GAACTGGTCGTGCAGGAGCTAGGGGAACTGCCTTTACCTTTTTCACGGATTCAAATGCAAAGTTTGCTAGGGGTCTAATTAGAATTCTGCAAGAGTCAGG GCAGATTGTGCCTCCAGCATTATCTGCTTTGGCTCGGTCATCTGGTTCTTTTGGAGGTTCTGCAGGTAACTTCCGTTCCAGAGGACGAGGAGGCAGCTTT GGCAACAGGGGTTCGATTTCAGGATCTAATACTGTGCCTCTTGGTGCTCGTAGACCTTGGTAA
AA sequence Show only first row Show all	>Potri.012G084600.1 pacid=42783236 polypeptide=Potri.012G084600.1.p locus=Potri.012G084600 ID=Potri.012G084600.1.v4.1 annot-version=v4.1 MMNPYDNRYTDPDSYRHRRSGLMGQQPPLGATYGRGGPVPYGSGGGPLPPSFASRGGPAPVGGGYPAFEPPASGFSVGRGGGGGGGRGRGFSGGRGSNFY TGDRRNDAGHGRGWNSGSGRGGRGYGGGGRGGRHGGGGPKGELDNIALPKQDFGNLVPFEKNFYFENPSIRALSEHEVVMYRTRREITVEGHDVPKPIRL FHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYMLPAFVHVAAQPRLVQGDGPIVLVLAPTRELAVQIQEEGLKFGSPAN IRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYWSATWPREVEILARQFLH NAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKLLKEVMDGSRLLIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAIMTA TDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTDSNAKFARGLIRILQESGQIVPPALSALARSSGSFGGSAGNFRSRGRGGSF GNRGSISGSNTVPLGARRPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63120			P-loop containing nucleoside t...		Potri.012G084600 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G108000 [exp]	2.00	0.7094
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Potri.001G355800 [exp]	3.46	0.6787	Pt-CNX5.1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107700 [exp]	5.00	0.6599
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107900 [exp]	9.79	0.6873
AT5G53480			ARM repeat superfamily protein...		Potri.012G017500 [exp]	22.58	0.5453
AT5G54130			Calcium-binding endonuclease/e...		Potri.014G108200 [exp]	24.97	0.5875
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Potri.011G010700 [exp]	25.09	0.6308	Pt-ALE.2
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.010G176300 [exp]	29.93	0.5406	HUA1.2
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.001G307500 [exp]	30.19	0.6274
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.008G080300 [exp]	39.00	0.5823	Pt-HUA1.1

Compare expression of checked genes

Potri.012G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.