Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15530 734 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 451 / 2e-150 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 447 / 5e-149 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 441 / 1e-146 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 418 / 9e-138 RLK receptor lectin kinase (.1) AT1G70110 416 / 6e-137 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 415 / 2e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 407 / 2e-133 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 397 / 1e-129 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 395 / 1e-128 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083300 [exp] 1043 / 0 AT1G15530 759 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 464 / 1e-155 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 459 / 1e-153 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 456 / 2e-152 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 454 / 1e-151 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 453 / 2e-151 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 443 / 2e-147 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 441 / 1e-146 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G103200 [exp] 440 / 3e-146 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014037 [exp] 858 / 0 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019879 [exp] 645 / 0 AT1G15530 621 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001564 [exp] 453 / 3e-151 AT3G53810 639 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004980 [exp] 450 / 5e-150 AT3G53810 640 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 442 / 2e-147 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10003224 [exp] 443 / 3e-147 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 442 / 9e-147 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 442 / 1e-146 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 438 / 4e-145 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 437 / 4e-145 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.012G084900.1 pacid=42783607 polypeptide=Potri.012G084900.1.p locus=Potri.012G084900 ID=Potri.012G084900.1.v4.1 annot-version=v4.1 ATGCTGCGATCACCTCTCCTCCTCTTCCTTTTCTTCTATCCCAGTTTTGGCCTTGACTTCCTCTTTAACTCCTTCAATGCCACAAACCCTGGAGTCACTC TAATCCCAGATGCCGGAGTCGACACCTCGGTGATCAGACTCCTCAACGATACCAACCAGAACTCAATTGGACGTGCTTTTTATCCGACAAAAATCAAGAT GAAACAAACCCAGAACTCAACAACGACTCTCTTTTCCTTTTCAACTTCTTTTGTCTTCTCCATATTGCCTAACATTGCTTCAAGTCCTGGCTTTGGTCTT GCTTTTGTTCTCTCTAACTGGACTAACCCACCTGGTGCTTTTCCTGGCCAATACTTTGGTCTTTTTACCAATACAACTGTATCCTCTGCGGCGCCACTTT TAGCTGTTGAATTTGATACTGGGCAGAACCCAGAATTTAATGATCCTGATAGGAATCATATTGGTATTGATTTGAACAACCCTGTGTCTTCTTTAACTAA GCCCGGTGGATACAATTCTTCTGCTGGCTTTGTGCCTGTCAGTATGGGAAATGGTCAGAATGTCCGAGCGTGGATTGATTTCGACGGGCCTAATTTTCAG ATTAATGTTACTGTAGCCCCTGTTGGTGTTTCTCGCCCATCTGTGCCGATACTTAGTTTTAAAGATCCTGTGATTGCGAATTATACTTCTGAGGAGATGT ATGTGGGGTTTTCCGCTTCAAAAACTACTTGGGTTGAAGCGCAAAGGATTTTAGCTTGGAGTTTTAGTGATACAGGTGTTGCTAGAGATATAAATGTTAC GAATTTGCCTGTTTTTAGCCTACCATCTTCGTCGAATTCGTTGTCAGCTGGCTCTATTGCTGGGATAACGATTGGCTGTGTTGTTTTGTTTGTGATTTGC GTGTTTGTGGTTTCTTGGTTTTGGTATAAGCAGAAGTTGAGAGATTCAGAAGAGGATGAGATTGAAGATTGGGAGCTTGAATATTGGCCTCATAGATTTT CCTATGGAGAATTAAGTCAAGCCACTAATGGATTCTCCATAGATCAGCTTTTGGGCTCAGGTGGATTTGGGAAAGTGTACAGAGGAACTCTCTCAAACAA TTCTGATATTGCTGTCAAATGCGTGAATCATGACTCTAAACAAGGCCTAAAAGAGTTCATGGCTGAAATATCGAGCATGGGCAGGCTGCAACATAAGAAC TTAGTTCAAATGCGAGGCTGGTGTAGAAAAGCCAGTGAGCTTATGCTTGTCTATGATTACATGCCCAATGGCAGCCTCGATCGTTACATATTCCACAAGC CTAAGAAGCTATTGAACTGGCAACAACGCCGCCAAGTCCTTGCTGATGTAGCTGAAGGATTAAACTATCTCCATCATGGCTGGGAAAAGGTAGTTGTGCA CAGGGATGTTAAATCAAGCAATATATTGTTAGATTCAGATATGCGAGGCAGGCTTGGAGATTTTGGCCTTGCAAAACTTTATAGTCACAATGAAGTACCT AATACAACTAGAGTAGTTGGTACATTGGGATACTTGGCTCCTGAGATGGCAACAATGGCTATAGCAACATCAGCAAGTGATGTCTATAGTTTTGGAGTTG TGATATTGGAGGTGGTTTGTGGTAGAAAGCCGGTAGAAATGGGATCAAACGAGGATGAGGATTCAGTGCTGATTGACGTGGTGAGAGATCTGTATGCTAC AGGGAAGGTGGTCGAGGCAGTGGATGAAAGAATGAAGGGGGAGTTTGTGGCAGAGGAAATGGAGTTGGTGTTGAAGCTTGGATTGGTTTGTTGCCATCCT GATTCCCAAAGGAGGCCTAGTATGCGGGAGGTGGTGGCAATTTTGGTCGGGGAAGATGTGGCTGCCGCACCTGCTGAGTTGTTGAATGTTTTGGCTAGTG GTGGCAGAGTCGGTGATGGTAGTAATCATGGCGGTGAAGAGGTGGCTCTAACGCTAGATGAACCGCAGGTGTGA
AA sequence Show only first row Show all	>Potri.012G084900.1 pacid=42783607 polypeptide=Potri.012G084900.1.p locus=Potri.012G084900 ID=Potri.012G084900.1.v4.1 annot-version=v4.1 MLRSPLLLFLFFYPSFGLDFLFNSFNATNPGVTLIPDAGVDTSVIRLLNDTNQNSIGRAFYPTKIKMKQTQNSTTTLFSFSTSFVFSILPNIASSPGFGL AFVLSNWTNPPGAFPGQYFGLFTNTTVSSAAPLLAVEFDTGQNPEFNDPDRNHIGIDLNNPVSSLTKPGGYNSSAGFVPVSMGNGQNVRAWIDFDGPNFQ INVTVAPVGVSRPSVPILSFKDPVIANYTSEEMYVGFSASKTTWVEAQRILAWSFSDTGVARDINVTNLPVFSLPSSSNSLSAGSIAGITIGCVVLFVIC VFVVSWFWYKQKLRDSEEDEIEDWELEYWPHRFSYGELSQATNGFSIDQLLGSGGFGKVYRGTLSNNSDIAVKCVNHDSKQGLKEFMAEISSMGRLQHKN LVQMRGWCRKASELMLVYDYMPNGSLDRYIFHKPKKLLNWQQRRQVLADVAEGLNYLHHGWEKVVVHRDVKSSNILLDSDMRGRLGDFGLAKLYSHNEVP NTTRVVGTLGYLAPEMATMAIATSASDVYSFGVVILEVVCGRKPVEMGSNEDEDSVLIDVVRDLYATGKVVEAVDERMKGEFVAEEMELVLKLGLVCCHP DSQRRPSMREVVAILVGEDVAAAPAELLNVLASGGRVGDGSNHGGEEVALTLDEPQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15530			Concanavalin A-like lectin pro...		Potri.012G084900 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G045000 [exp]	4.47	0.8702
AT3G07790			DGCR14-related (.1)		Potri.002G222100 [exp]	9.38	0.8430
AT2G36220			unknown protein		Potri.016G079500 [exp]	11.74	0.8524
AT4G12010			Disease resistance protein (TI...		Potri.017G105201 [exp]	13.22	0.8005
AT1G70880			Polyketide cyclase/dehydrase a...		Potri.004G020100 [exp]	13.41	0.8425
					Potri.019G015800 [exp]	15.65	0.8340
AT1G76920			F-box family protein (.1)		Potri.002G069900 [exp]	17.49	0.8144
					Potri.005G059801 [exp]	19.28	0.7542
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	20.34	0.8247
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	24.10	0.7683

Compare expression of checked genes

Potri.012G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.