Plant FIBer expression Database

Potri.012G085100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G63135 103 / 2e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019491
[exp]
64 / 1e-14 AT5G63135 54 / 7e-11 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15243 ANAPC15 Anaphase-promoting complex subunit 15
Representative CDS sequence
>Potri.012G085100.1 pacid=42784283 polypeptide=Potri.012G085100.1.p locus=Potri.012G085100 ID=Potri.012G085100.1.v4.1 annot-version=v4.1
ATGTTACAGTTCCCAGCTTTCATGACACAGTACCCAGTTTCAACAAGGACAATTCCAACATCGTATTTGCTACCTTCACAGTGGCCTCAGCCTCAAAGCG
AAGAGCTTCTCCTCGCCATGGAAGAATCCGATTTCGAAGACAAGTGCAATGAAATTAGAAAGGGTGATAGCAACCTTGCTGTGATTGGAAAAACAACTGT
TGATAACGATAAAGAAGAGTATGACAATGATGCAGATGATGATGATGCTGATAATGTTGAGGAATCTGAAGGTGAAGAATTTGAGCAAGAAACTAGCTGA
AA sequence
>Potri.012G085100.1 pacid=42784283 polypeptide=Potri.012G085100.1.p locus=Potri.012G085100 ID=Potri.012G085100.1.v4.1 annot-version=v4.1
MLQFPAFMTQYPVSTRTIPTSYLLPSQWPQPQSEELLLAMEESDFEDKCNEIRKGDSNLAVIGKTTVDNDKEEYDNDADDDDADNVEESEGEEFEQETS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G63135 unknown protein Potri.012G085100
[exp]
0 1
AT5G14105 unknown protein Potri.001G328100
[exp]
2.00 0.8649
AT1G05720 selenoprotein family protein (... Potri.013G126900
[exp]
2.82 0.8619
AT5G59890 ADF4, ATADF4 actin depolymerizing factor 4 ... Potri.008G052100
[exp]
5.29 0.8422
AT1G72020 unknown protein Potri.019G081700
[exp]
6.08 0.8856
Potri.005G255701
[exp]
7.93 0.8622
AT1G12390 Cornichon family protein (.1) Potri.001G116100
[exp]
14.49 0.8123
AT5G53650 unknown protein Potri.012G022900
[exp]
17.29 0.8219
AT3G48680 AtCAL2, GAMMACA... gamma carbonic anhydrase-like ... Potri.015G098600
[exp]
18.46 0.8245
AT1G04630 MEE4 maternal effect embryo arrest ... Potri.003G173800
[exp]
19.59 0.8530
AT1G14450 NADH dehydrogenase (ubiquinone... Potri.004G229900
[exp]
27.92 0.8262

Potri.012G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.