Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23280 297 / 1e-100 MAK16 protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083700 [exp] 457 / 8e-164 AT1G23280 296 / 3e-100 MAK16 protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019649 [exp] 284 / 2e-95 AT1G23280 296 / 2e-100 MAK16 protein-related (.1) Lus10019648 [exp] 279 / 2e-94 AT1G23280 285 / 4e-97 MAK16 protein-related (.1) Lus10000846 [exp] 262 / 2e-87 AT1G23280 273 / 4e-92 MAK16 protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [poplar] [flax] Ribosomal_L28e Ribosomal L28e protein family PF04874 [poplar] [flax] Mak16 Mak16 protein C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.012G085300.2 pacid=42783368 polypeptide=Potri.012G085300.2.p locus=Potri.012G085300 ID=Potri.012G085300.2.v4.1 annot-version=v4.1 ATGCAGCACGATGAGGTCATATGGCAAGTTATCAGACACAGTCACTGCAGTTTTATGGCCAAAATCACAACCGGAAATTTTTGTAGAAACCCATATAACA TTACTGGGGTTTGTAATCGTAGCTCTTGCCCTCTTGCTAATAGTCGCTATGCAACTATCCGTGATCATGATGGTGTCTTTTATTTATATATGAAGACCAT TGAGAGAGCTCATAAACCCAATGAGTTATGGGAAAGAGTAAAGTTGCCAAGAAACTACGAGAAGGCACTTGAAATCATAGACAAGCATCTGATGTACTGG CCAAAGTTTCTTGTGCACAAAGCTAAACAGCGCCTGACAAAAATGACTCAGATGCGTATACGTATGAGGAAGCTTGCTTTGAAAACAAGGGAAAAGATAA TGACTACACCCAGAAAAGAGATAAAAAGAGAGTCTAGAAGGGAGAAAAAGGCTGAAACAGCTGCTGAACTGGACAAGAGTATTGAGAAAGAGTTGCTTGA ACGACTCAATGGAGGACTTTATGGTGACATACATAATATTCTGCCAGAACATTTCAACAAAATTCTTGACGAAAATGAACTACATGCTGTTAGTGAAGAT GAAGAATATGAAGAGCAGGAACCTGAAATAGAATACGTTCAAGGCTATGATGATCTTGAAGAGGAAGATGATATAGAAGATTTTGGTGGTTTTGCAATCG ACAAGTCTCTCAAGAATAATGATGATGCATCTGAGGATGAAGAAGAGATGGATTCAGTTGATGGTAAGAGGGTTAAAAGAAGATCGGAGTCTGCTCATCA AAAGATGGAGGAAGATGAACGTAGAAAGTCGAAAAAGAAAGCAAAGGTTCTGGTTGAGGTCGAGCATGAAGATGCTTCTGAAAGGCAGAGGGCAACCTTT TGA
AA sequence Show only first row Show all	>Potri.012G085300.2 pacid=42783368 polypeptide=Potri.012G085300.2.p locus=Potri.012G085300 ID=Potri.012G085300.2.v4.1 annot-version=v4.1 MQHDEVIWQVIRHSHCSFMAKITTGNFCRNPYNITGVCNRSSCPLANSRYATIRDHDGVFYLYMKTIERAHKPNELWERVKLPRNYEKALEIIDKHLMYW PKFLVHKAKQRLTKMTQMRIRMRKLALKTREKIMTTPRKEIKRESRREKKAETAAELDKSIEKELLERLNGGLYGDIHNILPEHFNKILDENELHAVSED EEYEEQEPEIEYVQGYDDLEEEDDIEDFGGFAIDKSLKNNDDASEDEEEMDSVDGKRVKRRSESAHQKMEEDERRKSKKKAKVLVEVEHEDASERQRATF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23280			MAK16 protein-related (.1)		Potri.012G085300 [exp]	0	1
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	2.64	0.8505
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	3.46	0.8417
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.005G061000 [exp]	5.09	0.8470
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	7.00	0.8161
AT3G49990			unknown protein		Potri.005G234800 [exp]	7.74	0.8276
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.009G149400 [exp]	10.00	0.8282	HD2.2,HDT901
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	12.24	0.8081
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	12.36	0.8155
AT5G27395			Mitochondrial inner membrane t...		Potri.013G026700 [exp]	13.56	0.8156
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	13.67	0.7938	Pt-LON_ARA_ARA.2

Compare expression of checked genes

Potri.012G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.